RetrogeneDB ID:

retro_mtru_34

Retrocopy
location
Organism:Barrel medic (Medicago truncatula)
Coordinates:5:42944061..42944766(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:MTR_5g098090
Aliases:None
Status:KNOWN_PROTEIN_CODING
Parental gene
information
Parental gene summary:
Parental gene symbol:None
Ensembl ID:MTR_3g094860
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_mtru_34
ATGGCGCCGACGAAGGAGAGAGCATCTAGGGTTAGCCGAAACTCTGATTTGATCAGAGGGATTGGAAAGTTCTCAAAGTC
ACAGATGTATCACAAGAAAGGTATCTGGGTTATTAAGGCCAAAAATGGTGGCGTTTTTCCTCATCATGATCCTAAACCTA
AGCCCGAAACTGCTGTTGAAAAACCACCAAAATTTTACCCTGCTGATGATGTGAAGAAACCTCTTCGTAACAAGCATAAG
CCTAAGCAGACTAAGCTCAGGGCAAGCATCACTCCCGGCACAGTGCTGATTCTTCTTGCTGGTAGATTTAAGGGCAAGAG
GGTGGTGTTTTTGAAGCAGCTTCCTTCTGGATTGCTTCTTGTAACTGGTCCCTTCAAGATCAACGGAGTTCCTTTGAGAT
GTGTGAATCAGGCCTATGTGATTGGTACATCAACCAAAGTCGATATCTCCGGTGTTAATGTGGATAACCTTGATGACAAG
TACTTTTCAAAGGAAGCCCCAAAAAAGAAGAGCAAGGGAGAAGGCGAATTCTTTGAGTTAGACAAGGAGGAGAAAAAGGT
GTTACCTCAGCAGAAGAAAGATGACCAGAAAACAGTGGACGCTGCATTGATAAAAGCTATTGATAGCGTTCCAGACTTGA
AAACTTATCTTGGTGCCAGGTTTTCTCTCAAGGCAGGTGTGAAGCCACACGAACTAGTTTTCTAG

ORF - retro_mtru_34 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 85.04 %
Parental protein coverage: 100. %
Number of stop codons detected: 0
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalMAP-KTRTARVSRNPELIRGIGKYSRSAMYHKRGLWAIKAKHGGAFPRHDPVAKPAAPVEKPPKFYPADD
MAP.K.R..RVSRN..LIRGIGK.S.S.MYHK.G.W.IKAK.GG.FP.HDP..KP...VEKPPKFYPADD
RetrocopyMAPTKERASRVSRNSDLIRGIGKFSKSQMYHKKGIWVIKAKNGGVFPHHDPKPKPETAVEKPPKFYPADD
ParentalVKKPLRNKHKPKPTKLRASITPGTVLILLAGRFKGKRVVFLKQLPSGLLLVTGPFKINGVPLRRVNQAYV
VKKPLRNKHKPK.TKLRASITPGTVLILLAGRFKGKRVVFLKQLPSGLLLVTGPFKINGVPLR.VNQAYV
RetrocopyVKKPLRNKHKPKQTKLRASITPGTVLILLAGRFKGKRVVFLKQLPSGLLLVTGPFKINGVPLRCVNQAYV
ParentalIGTSTKVDISSVNADKFDDKYFSKESQKKTKKGEGEFFEADKEDKKVLPQEKKDDQKTVDAGLLKAIDSV
IGTSTKVDIS.VN.D..DDKYFSKE..KK..KGEGEFFE.DKE.KKVLPQ.KKDDQKTVDA.L.KAIDSV
RetrocopyIGTSTKVDISGVNVDNLDDKYFSKEAPKKKSKGEGEFFELDKEEKKVLPQQKKDDQKTVDAALIKAIDSV
ParentalPDLKTYLGARFSLKAGVKPHELVF
PDLKTYLGARFSLKAGVKPHELVF
RetrocopyPDLKTYLGARFSLKAGVKPHELVF

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Medicago truncatula was not studied using RNA-Seq expression data.
Medicago truncatula was not studied using ChIP-Seq data.
Medicago truncatula was not studied using EST data.
Medicago truncatula was not studied using FANTOM5 data.
retro_mtru_34 was not experimentally validated.

Retrocopy orthology:
Medicago truncatula does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species Parental gene accession Retrocopies number
Medicago truncatula MTR_3g094860 1 retrocopy
retro_mtru_34 ,



Copyright © RetrogeneDB 2014-2017