RetrogeneDB ID:

retro_mtru_37

Retrocopy
location
Organism:Barrel medic (Medicago truncatula)
Coordinates:4:55233197..55235018(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:MTR_4g132200
Aliases:None
Status:KNOWN_PROTEIN_CODING
Parental gene
information
Parental gene summary:
Parental gene symbol:None
Ensembl ID:MTR_2g085330
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_mtru_37
ATGGAGGATAATGGTGTTGAAGGAGGCAAAGCTACTGCACTTGGAAAGGATAATGGAAAGCTGGAAAAAGATTCAGGAGC
TGGTGATACCATCATATTTGGCTCGTTTGGAGATGGATTTGTTGAAGGGGATGCCAACGATGATGTCGCGGATTCCAATA
CCCCGAAAAATGTTGCTGAAGAATTTCCTGCACCTATGCAGATTCATTCTTTTTACTTTTTCAGATGGAGACCTTATGAT
GATCCATCTATCAAAGCGAAGATTGATCAGCTTGATAAAGAGATCAACAAGAAAAATGAAGCTCGGTTTCAGATCACTGA
AGCGCTGAATGCAAAGTGGTCGAAAAGATCAGAGTTGATTTCTCAGATTAAGATTCTAAGAGGCGACAACAAGCAGTTGC
AGAGCATTATCAATGAGAAAATGGAAGAGATTCAGCCTCTGCAGCAGGCACTGCGAAAGCTGCGTAACTTGAATAATGCA
GGTCGGCGCCGTATATGCTCGTCTGAGGAGGAACTTAACGATACAATATATAGCTTGCAATACCGCATTCAGCACGAGAG
CATTCCATTGAATGAGGAAAGGCAAATTGTCCGAGAAATCAAAAAGCTTGAGGATACAAGGGAGAAAGTCATTGCCAATT
CTGCAATGAAGACTAAGTTAGAGGATACTATTGGGCCGAAAGATGCCATCCAAGATCAGGTTAAGCTTATAGGTGGGGAT
TTGGATGGTTTGAAGAAGGAGAGACAAGCGATTCGATCCAAAATCAAGCAAATTGAGGATGTGCTGGAAACCATTTACAC
AAATATCCAGTCTCTACAGGAAGAACTGATAGATGTTACTCAGAAGAGAGAACAAGCTTTTGAGAGCATTCAGAAGCTGA
GGAAACAACATAATGAGGGGAACTCCTATTTCTACCAAAATCGTACACTTCTGACCAAGGCACGTGATCTGGCTGCTAAG
AAAGATGTTACAGCTGTTTATGAACTTTTACAGACAGAGGGTGAGAAATTCATGTCGCTTTGGAAAGGTGGCAAAACTTT
TAGGGCTGATTATGAGAAAAGAATTATGTCATTGTTGGATATGCGACAGCTCGGTAGGGACGGGCGTGTGAGGAACCCCG
ATGAAAAACCACTGCGGGAAGAACTGAAACCTGCTGCTGAACTTGAGGCATTACCAAAAGCCGTCGCAAAACAGCCAAAG
GAGGAGCCTAAGCCTTCTCCAGTTGAAACTTTGCCAGCTCAGAAACAAACCAAAACCAAAAGTAAAGATTTGAAAACTAA
ATCGGATAATAAGGATTTAGAAGCAATTAATGATGATTATGAATTTGAAAATCCTCATAAGGAGATCTCTGCTGCGAAAG
TGCCTAAAATCGATCCAGCGAAATTAAAACAGATGAAAAGAGAAGAGGAAATTGCAAAAGCAAAGCTTGCTGCGGAAAGG
AAGAAGAAGTTGGCAGAGAAAGCTGCAGACAAAGCAGCTCTCAAAACACAGAAGGAAGCTGAGAAAAAACTTAAGGATCG
CGAGAAGAAAGCAAAGAAGAAATCTGGAGCTGTTACCACTCCCCTGGAGGAACAGGAAGATGTAGAAGTTGAGGCAATCG
AACAGGAAATGGTGAATGATGTTGTCGAGGCCCCGGCTCCAGTGAAGGAAAAGGTCGCAAAGGAGAGTGGTGTCAGGTTC
CGAAGCCGAGCAAAAGGACCAGAGTCGATTCAAAAAGCTATTATGAAGCGGAAAAAGTCCAACAATTACTATACATGGAT
TACTGTTGCTGCTTTATTAGTGCTGCTGCCGTTGGTGCTTGGATACACCTATCTTCTCTAA

ORF - retro_mtru_37 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 77.08 %
Parental protein coverage: 70.77 %
Number of stop codons detected: 0
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalDNGVEGDKPVALEKENGKLEKDVGAGETIKFGSHGDESAKVEVND-VADSNTPKDAAEEWPAPKQIHYFY
DNGVEG.K..AL.K.NGKLEKD.GAG.TI.FGS.GD.......ND.VADSNTPK..AEE.PAP.QIH.FY
RetrocopyDNGVEGGKATALGKDNGKLEKDSGAGDTIIFGSFGDGFVEGDANDDVADSNTPKNVAEEFPAPMQIHSFY
ParentalFVRCRPYDDPSIKAKIDLLDKEISKKNQARFQITEALKAKRSEKSELISQIKILREDNRQYQSLFDEKMK
F.R.RPYDDPSIKAKID.LDKEI.KKN.ARFQITEAL.AK.S..SELISQIKILR.DN.Q.QS...EKM.
RetrocopyFFRWRPYDDPSIKAKIDQLDKEINKKNEARFQITEALNAKWSKRSELISQIKILRGDNKQLQSIINEKME
ParentalEIEPLQQALGKLRNSNNAGRGGICQSEEELNKFINGLQYRIQHESIPLTEEKQILREIKQLEGTREKVIA
EI.PLQQAL.KLRN.NNAGR..IC.SEEELN..I..LQYRIQHESIPL.EE.QI.REIK.LE.TREKVIA
RetrocopyEIQPLQQALRKLRNLNNAGRRRICSSEEELNDTIYSLQYRIQHESIPLNEERQIVREIKKLEDTREKVIA
ParentalNSAMRTKLHDTIGPKDTIQDQVKLIGGDLDGVKKERQAIRSKIKQIDDVLKAIDIDIQSLQAELVAVTQK
NSAM.TKL.DTIGPKD.IQDQVKLIGGDLDG.KKERQAIRSKIKQI.DVL..I...IQSLQ.EL..VTQK
RetrocopyNSAMKTKLEDTIGPKDAIQDQVKLIGGDLDGLKKERQAIRSKIKQIEDVLETIYTNIQSLQEELIDVTQK
ParentalREQAFESIQKLRKQRDEGNSYFYQSRTLLTKARELAAKKDVAAIDELSQTEGEKFMALWNGGKAFRADYE
REQAFESIQKLRKQ..EGNSYFYQ.RTLLTKAR.LAAKKDV.A..EL.QTEGEKFM.LW.GGK.FRADYE
RetrocopyREQAFESIQKLRKQHNEGNSYFYQNRTLLTKARDLAAKKDVTAVYELLQTEGEKFMSLWKGGKTFRADYE
ParentalKRILSSLDMRQLSRDGRIRNWDEKPLLEEPKPAAEPEALPKPVAKQPKEAPKPSPVETLPAQKETKSKGR
KRI.S.LDMRQL.RDGR.RN.DEKPL.EE.KPAAE.EALPK.VAKQPKE.PKPSPVETLPAQK.TK.K..
RetrocopyKRIMSLLDMRQLGRDGRVRNPDEKPLREELKPAAELEALPKAVAKQPKEEPKPSPVETLPAQKQTKTKSK
ParentalDLAAIDDDYEFE
DL....D....E
RetrocopyDLKTKSDNKDLE

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






RNA-Seq - click to see more details

Medicago truncatula was not studied using RNA-Seq expression data.

ChIP-Seq - click to see more details

Medicago truncatula was not studied using ChIP-Seq data.

EST - click to see more details

Medicago truncatula was not studied using EST data.

TSS - click to see more details

Medicago truncatula was not studied using FANTOM5 data.

Lab - click to see more details

retro_mtru_37 was not experimentally validated.

Retrocopy orthology:
Medicago truncatula does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.
Parental genes homology:
Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species Parental gene accession Retrocopies number
Medicago truncatula MTR_2g085330 1 retrocopy
retro_mtru_37 ,


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