RetrogeneDB ID:

retro_mtru_42

Retrocopy
location
Organism:Barrel medic (Medicago truncatula)
Coordinates:7:40302773..40303091(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:MTR_7g100280
Aliases:None
Status:KNOWN_PROTEIN_CODING
Parental gene
information
Parental gene summary:
Parental gene symbol:None
Ensembl ID:MTR_2g008180
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_mtru_42
ATGGTGAACGTTCCAAAGACAAAGAAAACCTACTGCAAAAGCAAGGAGTGCAAGAAGCACACCTTACACAAAGTCACCCA
ATACAAAAAGGGTAAGGATTCCATCGCTGCTCAGGGAAAACGTCGTTATGACCGTAAACAATCTGGTTATGGTGGACAGA
CCAAACCTGTCTTTCACAAAAAGGCAAAAACTACTAAGAAAATTGTGTTGAGGCTTCAGTGTCAAGGTTGCAAACATGTT
TCACAACACGCAATTAAGAGGTGTAAGCACTTTGAGATTGGTGGTGACAAGAAGGGAAAAGGAACATCTCTGTTTTAG

ORF - retro_mtru_42 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 100. %
Parental protein coverage: 100. %
Number of stop codons detected: 0
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalMVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSIAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVL
MVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSIAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVL
RetrocopyMVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSIAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVL
ParentalRLQCQGCKHVSQHAIKRCKHFEIGGDKKGKGTSLF
RLQCQGCKHVSQHAIKRCKHFEIGGDKKGKGTSLF
RetrocopyRLQCQGCKHVSQHAIKRCKHFEIGGDKKGKGTSLF

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Medicago truncatula was not studied using RNA-Seq expression data.
Medicago truncatula was not studied using ChIP-Seq data.
Medicago truncatula was not studied using EST data.
Medicago truncatula was not studied using FANTOM5 data.
retro_mtru_42 was not experimentally validated.

Retrocopy orthology:
Medicago truncatula does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species Parental gene accession Retrocopies number
Medicago truncatula MTR_2g008180 1 retrocopy
retro_mtru_42 ,



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