>retro_mtru_69
TTGTTCTCATACTTTCATTATATTTTTGTGAAGTGAAACATGTCTGAAGATGCACAAGATCCGGTTAAACTTCATGTCCG
TTATGTAGATGTGAAAAAGAGGGCTTGGTTCACTATAAACCCCACCGACAAGTTGGACGAGTTGAAGACAAAACTTGACG
ACTTCTTTATCCATATTGGTTCAAATCACAGAACATATTATGTAGTAGTACAAGTTCCAGGCGTGGACTTGTGGGAGGAT
AAGGAAGAGGACCGTTGGAAGACCGCGTATTTTCCACAACTAGTCAAAGATGATAGTGACGTTGATTACATGTTTCGCGT
GATGGTTGAAAATAATCTTTTACATCTTTATGTCCGATCCGTTGAAGTG
ORF - retro_mtru_69 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
79.67 % |
Parental protein coverage: |
92.42 % |
Number of stop codons detected: |
1 |
Number of frameshifts detected |
0 |
Retrocopy - Parental Gene Alignment:
Parental | LFTQIVSLIVKVNVTNETSSTLIKHQR-TDVKKRAWFTINPTDKLDELKAKLDDFFIHIGSNHRTYYVVV |
| LF.......VK.N...........H.R..DVKKRAWFTINPTDKLDELK.KLDDFFIHIGSNHRTYYVVV |
Retrocopy | LFSYFHYIFVK*NMSEDAQDPVKLHVRYVDVKKRAWFTINPTDKLDELKTKLDDFFIHIGSNHRTYYVVV |
|
Parental | QVPGVDLGEDKEEDRWKTVYFPQLVKDDSDVDYMFRVMVENNLLHLYVRSVEV |
| QVPGVDL.EDKEEDRWKT.YFPQLVKDDSDVDYMFRVMVENNLLHLYVRSVEV |
Retrocopy | QVPGVDLWEDKEEDRWKTAYFPQLVKDDSDVDYMFRVMVENNLLHLYVRSVEV |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Medicago truncatula was not studied using RNA-Seq expression data.
Medicago truncatula was not studied using ChIP-Seq data.
Medicago truncatula was not studied using EST data.
Medicago truncatula was not studied using FANTOM5 data.
retro_mtru_69 was not experimentally validated.
Retrocopy orthology:
Medicago truncatula does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
1 parental gene, and
2 retrocopies.