RetrogeneDB ID:

retro_mtru_73

Retrocopy
location
Organism:Barrel medic (Medicago truncatula)
Coordinates:6:27277069..27277262(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:None
Ensembl ID:MTR_8g468080
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_mtru_73
GGAGGTTCCCTTAGGAAACTAAAGGATACTATTTCTACATCTTCTTCCTGGACAAAAGTTGTTTGTCGCTAGTACTGGAG
TATTCCTTTTCAAGGAGTATAACTTTGCAAGAGCTAGTGGGAGTGATGTAGAACTTGAATTAAGTCAAGTACCACAAAAT
ACATGTTTCTCAATGGAACATGAACTGATTCAA

ORF - retro_mtru_73 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 60. %
Parental protein coverage: 52.89 %
Number of stop codons detected: 0
Number of frameshifts detected 1


Retrocopy - Parental Gene Alignment:

ParentalGCSLRKLKDTISTSSSLTK-LFVARTEVFLFKEYGSARASGSDGFVNLKDTRKEISGSIDISLVE
G.SLRKLKDTISTSSS.TK.LFVA.T.VFLFKEY..ARASGSD....L.........S....L..
RetrocopyGGSLRKLKDTISTSSSWTK>LFVASTGVFLFKEYNFARASGSDVELELSQVPQNTCFSMEHELIQ

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Medicago truncatula was not studied using RNA-Seq expression data.
Medicago truncatula was not studied using ChIP-Seq data.
Medicago truncatula was not studied using EST data.
Medicago truncatula was not studied using FANTOM5 data.
retro_mtru_73 was not experimentally validated.

Retrocopy orthology:
Medicago truncatula does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 1 parental gene, and 6 retrocopies.

Species Parental gene accession Retrocopies number
Medicago truncatula MTR_8g468080 6 retrocopies



Copyright © RetrogeneDB 2014-2017