>retro_mtru_8
ATGAAGCTTATGCTTCTTTCAACTTTCCTTCTCATCATTTCAACAGCTCTAGCCAACATATCAAATGAACAAGATTTCAA
TACCAAACAAGCACATGAACTTAATGGAAATGGAAACATACAAGTCTCTACTAGGTTGAACCGCGGAGTTGTGATGATGG
AAAGTAATGAACACAAACATGAACTATCTGTTACCATAAGAAAAGGAGGAGGAATAGGCAGAGGAATAGGCAGAGGAGTG
GGTGGTGGAGTTATCGGTGCTGGAGTTATCGGCGGGTCAACCACCTATGACAGGAGTCATCACTCCAATAGTTCTGCATC
ATCATTATCTGCAGGGCCTTATGTTTGTGTCTCAACATTTATTTTATGTTTGAGCTTTTGGTTATAA
ORF - retro_mtru_8 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
81.82 % |
Parental protein coverage: |
100. % |
Number of stop codons detected: |
0 |
Number of frameshifts detected |
0 |
Retrocopy - Parental Gene Alignment:
Parental | MKLMLLATFLLIISRALA-ISNEQDFNSKQPHELNGSLDGNGNIEVSTRLNHRVAMMESNEHKHELSVTI |
| MKLMLL.TFLLIIS.ALA.ISNEQDFN.KQ.HELN....GNGNI.VSTRLN..V.MMESNEHKHELSVTI |
Retrocopy | MKLMLLSTFLLIISTALANISNEQDFNTKQAHELN----GNGNIQVSTRLNRGVVMMESNEHKHELSVTI |
|
Parental | RKGGGIGRGVGAGAGAGIIGAGVIGGSTAYHGSHRSNSSAPSLSAGPYVCVSTFLLCLSFWL |
| RKGGGIGRG.G.G.G.G.IGAGVIGGST.Y..SH.SNSSA.SLSAGPYVCVSTF.LCLSFWL |
Retrocopy | RKGGGIGRGIGRGVGGGVIGAGVIGGSTTYDRSHHSNSSASSLSAGPYVCVSTFILCLSFWL |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Medicago truncatula was not studied using RNA-Seq expression data.
Medicago truncatula was not studied using ChIP-Seq data.
Medicago truncatula was not studied using EST data.
Medicago truncatula was not studied using FANTOM5 data.
retro_mtru_8 was not experimentally validated.
Retrocopy orthology:
Medicago truncatula does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
1 parental gene, and
1 retrocopy.