RetrogeneDB ID: retro_nleu_1021

Retrocopy location

• Organism: Gibbon (Nomascus leucogenys)
• Coordinates: GL397278.1:32772478..32773177(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: C5ORF15
• Ensembl ID: ENSNLEG00000008019
• Aliases: None
• Description: None

Sequence

>retro_nleu_1021
CTGGTCTTGGCGCTCCTCCTTGTGTCCACCACTCTATCCAGTGTTGTATCATGGACTGATTCACTGAGCCAAACTGTACT
CAACTCAGATATTTCTACCCCAAATGTGAATGCTTTAACACATGAAAAACAAACCAAATCTTCTATTTCCCAAATCAGTA
CCACCCTCCCTCCCACAATGAGTACTGAGAAAAGTGGAGGAGCATCTGCTGCCCCTCATCCCTTGCCTACACCTCTGTCT
CAAGAGGAAGCTGATAACAATGAAGATCCTAGCATAGAGGAGGAGGATCTTCTCATGCTGAACAGCTCTCCATCCACAGC
CAAAGACACTCTGGACAGTGGCAATTATGGAGAACCAGACTATGAATGGACCACGGGCCCCAGGGATGACGACCAGTCTG
ATGACACCTTGGAAGAAAACAGGGGTTACATGGAAATTGAACAGTCAGTGAAATCTTTTAAGATGCCATCCTCAAATATA
GAAGAGGAAGACAGCCATTTCTTTTTTCATCTTATTATTTTTGCTTTTGGCATTGCTATCATCTACATTAACTATCACAA
CAAAAGGAAGATTTTTCTTCTGGTTCAAAGCAGGAAATGGTGTGATGGCCTTTGTTCCAAAACAGTGGAATACCATTGCC
TAGATCAGAATGTTAATGAGGCAATGTCTTCTTTGAAGATTACCAATAATTATATTTTT

Alignment

ORF - retro_nleu_1021 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 88.84 %
• Parental protein coverage: 87.92 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  LVLALLLVSAALSSVVSRTDSPSPTVLSSHISTPNVNALAHENQTKPSISQISTTLPPTTSTEKSGGASV
          LVLALLLVS..LSSVVS.TDS.S.TVL.S.ISTPNVNAL.HE.QTK.SISQISTTLPPT.STEKSGGAS.
Retrocopy LVLALLLVSTTLSSVVSWTDSLSQTVLNSDISTPNVNALTHEKQTKSSISQISTTLPPTMSTEKSGGASA

Parental  APHPSPTPLSPEEADNNEDPSIEEEDLLMLNSSPSTAKDTLDNGDYGEPDYDWTTGPRDDDESDDTLEEN
          APHP.PTPLS.EEADNNEDPSIEEEDLLMLNSSPSTAKDTLD.G.YGEPDY.WTTGPRDDD.SDDTLEEN
Retrocopy APHPLPTPLSQEEADNNEDPSIEEEDLLMLNSSPSTAKDTLDSGNYGEPDYEWTTGPRDDDQSDDTLEEN

Parental  RGYMEIEQSVKSFKMPSSNIEEEDSHFFFHLIIFAFCIAVVYITYHNKRKIFLLVQSRKWRDGLCSKTVE
          RGYMEIEQSVKSFKMPSSNIEEEDSHFFFHLIIFAF.IA..YI.YHNKRKIFLLVQSRKW.DGLCSKTVE
Retrocopy RGYMEIEQSVKSFKMPSSNIEEEDSHFFFHLIIFAFGIAIIYINYHNKRKIFLLVQSRKWCDGLCSKTVE

Parental  YHRLDQNVNEAMPSLKITNDYIF
          YH.LDQNVNEAM.SLKITN.YIF
Retrocopy YHCLDQNVNEAMSSLKITNNYIF

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Nomascus leucogenys was not studied using RNA-Seq expression data.

ChIP-Seq

Nomascus leucogenys was not studied using ChIP-Seq data.

EST

Nomascus leucogenys was not studied using EST data.

TSS

Nomascus leucogenys was not studied using FANTOM5 data.

Lab

retro_nleu_1021 was not experimentally validated.

Homology

Retrocopy orthology:

Nomascus leucogenys does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

---

Parental genes homology:

Parental genes homology involve 5 parental genes, and 5 retrocopies.

Species	Parental gene accession	Retrocopies number
Gorilla gorilla	ENSGGOG00000021947	1 retrocopy	retro_ggor_416,
Nomascus leucogenys	ENSNLEG00000008019	1 retrocopy	retro_nleu_1021 ,
Pongo abelii	ENSPPYG00000015780	1 retrocopy	retro_pabe_295,
Pan troglodytes	ENSPTRG00000017234	1 retrocopy	retro_ptro_324,
Pteropus vampyrus	ENSPVAG00000012421	1 retrocopy	retro_pvam_171,