RetrogeneDB ID: retro_nleu_107

Retrocopy location

• Organism: Gibbon (Nomascus leucogenys)
• Coordinates: GL397279.1:15442294..15442564(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSNLEG00000018971
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: FXYD3
• Ensembl ID: ENSNLEG00000011027
• Aliases: None
• Description: None

Sequence

>retro_nleu_107
ATGGAGAGAGTGACCCTGGCCCTTCTCCTACTGGCAGGCCTGACTGCCTTGGAAGCCAATGACCCATTTGCCAATAAAGA
CGATCCCTTCTACTATGACTGGAAAAACCTGCCGCTGAGCGGACTGATCTGCGGAGGGCTCCTGGCCATTGCTGGGATCG
CGGCAGTTCTGAGTGGCAAATGCAAATGCAAGAGCAGCCAGAAGCAGCACAGTCCTGTACCTGAGAAAGCCATCCCACTC
ATCACTCCAGGCTCTGCCACTACCTGCTGA

Alignment

ORF - retro_nleu_107 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 57.47 %
• Parental protein coverage: 58.74 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MQKVTLGLLVFLAGLPVLDANDP-EDKNSPFYYDWHS-QVGGLICAGVLCALGIIIVLSAKCKCKFGQKS
          M..VTL.LL..LAGL..L.ANDP...K..PFYYDW......GLIC.G.L...GI..VLS.KCKCK..QK.
Retrocopy MERVTLALLL-LAGLTALEANDPFANKDDPFYYDWKNLPLSGLICGGLLAIAGIAAVLSGKCKCKSSQKQ

Parental  -SHRPGETPPLITPGSA
          .S..P....PLITPGSA
Retrocopy HSPVPEKAIPLITPGSA

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Nomascus leucogenys was not studied using RNA-Seq expression data.

ChIP-Seq

Nomascus leucogenys was not studied using ChIP-Seq data.

EST

Nomascus leucogenys was not studied using EST data.

TSS

Nomascus leucogenys was not studied using FANTOM5 data.

Lab

retro_nleu_107 was not experimentally validated.

Homology

Retrocopy orthology:

Nomascus leucogenys does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 2 parental genes, and 2 retrocopies.

Species	Parental gene accession	Retrocopies number
Monodelphis domestica	ENSMODG00000027578	1 retrocopy	retro_mdom_976,
Nomascus leucogenys	ENSNLEG00000011027	1 retrocopy	retro_nleu_107 ,