RetrogeneDB ID: retro_nleu_148

Retrocopy location

• Organism: Gibbon (Nomascus leucogenys)
• Coordinates: ADFV01140443.1:8608..9747(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSNLEG00000000298
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: UBL7
• Ensembl ID: ENSNLEG00000014486
• Aliases: None
• Description: None

Sequence

>retro_nleu_148
ATGTCTCTCTCAGACTGGCACCTGTGGTGAAGCTGGCTGACCAGCCACTTGCTCCAAAGTCTATTCTTCAGTTGCCAGAG
ACAGAACTGGGAGAATACTCGCTAGGGGGCTATAGTATTTCATTTCTGAAGCAGCTTATTGCTGGCAAACTGCAGGAGTC
TGTTCCAGACCTTGAGCTGATTGATCTTATCTACTGTGGTCGGAAGCTAAAAGATGACCAGACACTTGACTTCTATGGCA
TTCAACCGGGGTCCACCGTCCATGTTCTGCGAAAGTCCTGGCCCGAACCTGATCAGAAACCGGAACCTGTGGACAAAGTG
GCTGCCATGAGAGAGTTCCGGTTGTTGCACACTGCGCTGCACAGCAGCTCCTCTTACAGGGAGGCGGTCTTTAAGACGCC
CAGCAATAAGGAATCTCTGGATCAGCTCACTGTGGCCACCCCAGGCCTCAGCAGTGACCCTATTGCTTTTGGGGTTCTCC
AGGACAAGGCCCTCTTCTCTGTCTTCGCTGATCCCAATATGCTTGATACATTGGTGCCTGCTCACCCAGCCCTCGTCAGT
GCCATTGTCCTGGTTCTGCACTCCGTAGCAGGCAGTGCCCCGATGCCTGGGACTGACTTCTCTTCCCGGAGCATGCCCTC
CAGCTCATACTGGGATATGCCAGGTGGCTTCCTGTTTGAAGGGCTCTCAGATGATGAGGACGACTTTCACCCAAACACGA
GGTCCACACCCTCTAGCAGTACCCCCAGCTCCCGCCCAGCCTTCCTGGGGTACAGTGGAGCTGCTGGGCCCTGGCCCATC
ACCCAGAGTGAGCTGGCCACCGCCTTGGCCCTGGCCAGCACTCCGGAGAGCAGCTCTCACACACCGACTCCTGGTACCCA
GGGCCATTCCTCAGGGACCTCACCAATGTCCTCTGGTGTCAAGTCAGGGACGCCCATCACCAGTGATCTCTTCAGCCAAG
CCCTACAGCATGCCCTTCAGGCCTCTGGGCAGCCCAGCCTTCAGAGCCAGTGGCAGCCCCAGCTGCAGCAGCTATGTGAC
ATGGGCATCCAGGACGATGAGCTGAGCCTGTGGGCCCTGCAGGCCACTGGTGGGGACATGCAAGTGGCCCTGGAGCTCAT
CTTTGCTGGAGGAGCCCCA

Alignment

ORF - retro_nleu_148 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 94.23 %
• Parental protein coverage: 100.0 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  MSLSDWHL-AVKLADQPLAPKSILRLPETELGEYSLGGYSISFLKQLIAGKLQESVPDPELIDLIYCGRK
          MSLSDWHL..VKLADQPLAPKSIL.LPETELGEYSLGGYSISFLKQLIAGKLQESVPD.ELIDLIYCGRK
Retrocopy MSLSDWHL<VVKLADQPLAPKSILQLPETELGEYSLGGYSISFLKQLIAGKLQESVPDLELIDLIYCGRK

Parental  LKDDQTLDFYGIQPGSTVHVLRKSWPEPDQKPEPVDKVAAMREFRVLHTALHSSSSYREAVFKMLSNKES
          LKDDQTLDFYGIQPGSTVHVLRKSWPEPDQKPEPVDKVAAMREFR.LHTALHSSSSYREAVFK..SNKES
Retrocopy LKDDQTLDFYGIQPGSTVHVLRKSWPEPDQKPEPVDKVAAMREFRLLHTALHSSSSYREAVFKTPSNKES

Parental  LDQIIVATPGLSSDPIALGVLQDKDLFSVFADPNMLDTLVPAHPALVNAIVLVLHSVAGSAPMPGTDSSS
          LDQ..VATPGLSSDPIA.GVLQDK.LFSVFADPNMLDTLVPAHPALV.AIVLVLHSVAGSAPMPGTD.SS
Retrocopy LDQLTVATPGLSSDPIAFGVLQDKALFSVFADPNMLDTLVPAHPALVSAIVLVLHSVAGSAPMPGTDFSS

Parental  RSMPSSSYRDMPGGFLFEGLSDDEDDFHPNTRSTPSSSTPSSRPASLGYSGAAGPRPITQSELATALALA
          RSMPSSSY.DMPGGFLFEGLSDDEDDFHPNTRSTPSSSTPSSRPA.LGYSGAAGP.PITQSELATALALA
Retrocopy RSMPSSSYWDMPGGFLFEGLSDDEDDFHPNTRSTPSSSTPSSRPAFLGYSGAAGPWPITQSELATALALA

Parental  STPESSSHTPTPGTQGHSSGTSPMSSGVQSGTPITNDLFSQALQHALQASGQPSLQSQWQPQLQQLRDMG
          STPESSSHTPTPGTQGHSSGTSPMSSGV.SGTPIT.DLFSQALQHALQASGQPSLQSQWQPQLQQL.DMG
Retrocopy STPESSSHTPTPGTQGHSSGTSPMSSGVKSGTPITSDLFSQALQHALQASGQPSLQSQWQPQLQQLCDMG

Parental  IQDDELSLRALQATGGDIQAALELIFAGGAP
          IQDDELSL.ALQATGGD.Q.ALELIFAGGAP
Retrocopy IQDDELSLWALQATGGDMQVALELIFAGGAP

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Nomascus leucogenys was not studied using RNA-Seq expression data.

ChIP-Seq

Nomascus leucogenys was not studied using ChIP-Seq data.

EST

Nomascus leucogenys was not studied using EST data.

TSS

Nomascus leucogenys was not studied using FANTOM5 data.

Lab

retro_nleu_148 was not experimentally validated.

Homology

Retrocopy orthology:

Nomascus leucogenys does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 2 parental genes, and 2 retrocopies.

Species	Parental gene accession	Retrocopies number
Myotis lucifugus	ENSMLUG00000011861	1 retrocopy	retro_mluc_550,
Nomascus leucogenys	ENSNLEG00000014486	1 retrocopy	retro_nleu_148 ,