>retro_nleu_1978
GACCAGTGGGAAGAGGAATTTGAAAAGGTCCCCCTGATTATAAGAAAGCACCATCAGAAATTGATCCCAGGGAGAATCCT
GACTTGGCTTGTCTCCAGTCAATTATTTTTGATGAGAAGCATTCTCCAGAACAGGCCAAGACCTATAAAGATGAAGGCAA
AGATTATATTAAAGAAAAAGACTACAAGAAAGCTGTAATTTCCTACACTGAAGGATTAAAGAAGAAATGTGCAAATCTTG
ATTTGAATGCTGTCCTTTATACCAACCAGGCAGCAGCACAATACTATCTGGGCAATTTTCATTCTGCTCTCAGTGATGTG
ACAGCTGCCAGAAAGTTAAAACCCTGCTACCTCAAAGCAATAATAAGAGGTGCCTTATGCCATCTGGAACTGAAACACTT
TGCCAAGGCTGTGAACTGATGTGATGAGGGACTGCAGAAAGATGCCAAAGAGAAGAAGCTTCTGGAAATGAGGGCTAAAG
CAGACAAGCTGAAGCTAATTGAACAGAGGGATGTGAGGAAAGCCAACTTGAAAGAAAAGGAGAGGAATCAGAATGAGGCT
TTACTCCAGGATATCAAGGCTAGGAATATCAGGCTCTCTGAAGCTGCCTGTGAGGATGAAGTTTCAGCCTCAGAAGGTCT
AAGTAAGCTTTTCCTGGATGGACTCAGCTCTGAGAACCCCCATGGAGCCAGGGTGAGTCTAGATGACCAGGGCAGGCTGA
GCCGGCCTGTGCTCTTTCTATACCCAGAGTATGCCCAATCGGACTTCATCTCTGCTTTTCATGAGGACTCCAGGTTTACT
GATCATCTAATGGTGATGTTTGGTGAAACACCCTCTTGAGACCTAGAGCAAAAATATTGCCCTGATAATTTGGAGGTCTA
CATTGAGGATGAGGACAGGGCAGAACTGTACCGT
ORF - retro_nleu_1978 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
88.96 % |
Parental protein coverage: |
77.14 % |
Number of stop codons detected: |
2 |
Number of frameshifts detected |
1 |
Retrocopy - Parental Gene Alignment:
Parental | DGWFLEFEKVPLFMTR-APSEIDPRENPDLACLQSIIFDEERSPEEQAKTYKDEGNDYFKEKDYKKAVIS |
| D.W..EFEKVPL.....APSEIDPRENPDLACLQSIIFDE..SPE.QAKTYKDEG.DY.KEKDYKKAVIS |
Retrocopy | DQWEEEFEKVPLIIRK<APSEIDPRENPDLACLQSIIFDEKHSPE-QAKTYKDEGKDYIKEKDYKKAVIS |
|
Parental | YTEGLKKKCADPDLNAVLYTNRAAAQYYLGNFRSALNDVTAARKLKPCHLKAIIRGALCHLELKHFAEAV |
| YTEGLKKKCA..DLNAVLYTN.AAAQYYLGNF.SAL.DVTAARKLKPC.LKAIIRGALCHLELKHFA.AV |
Retrocopy | YTEGLKKKCANLDLNAVLYTNQAAAQYYLGNFHSALSDVTAARKLKPCYLKAIIRGALCHLELKHFAKAV |
|
Parental | NWCDEGLQIDAKEKKLLEMRAKADKLKRIEQRDVRKANLKEKKERNQNEALLQAIKARNIRLSEAACEDE |
| N.CDEGLQ.DAKEKKLLEMRAKADKLK.IEQRDVRKANLKE.KERNQNEALLQ.IKARNIRLSEAACEDE |
Retrocopy | N*CDEGLQKDAKEKKLLEMRAKADKLKLIEQRDVRKANLKE-KERNQNEALLQDIKARNIRLSEAACEDE |
|
Parental | DSASEGLGELFLDGLSSENPHGARLSLDEQGRLSWPVLFLYPEYAQSDFISAFHEDSRFIDHLMVMFGET |
| .SASEGL..LFLDGLSSENPHGAR.SLD.QGRLS.PVLFLYPEYAQSDFISAFHEDSRF.DHLMVMFGET |
Retrocopy | VSASEGLSKLFLDGLSSENPHGARVSLDDQGRLSRPVLFLYPEYAQSDFISAFHEDSRFTDHLMVMFGET |
|
Parental | PSWDLEQKYCPDNLEVYFEDEDRAELYR |
| PS.DLEQKYCPDNLEVY.EDEDRAELYR |
Retrocopy | PS*DLEQKYCPDNLEVYIEDEDRAELYR |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Nomascus leucogenys was not studied using RNA-Seq expression data.
Nomascus leucogenys was not studied using ChIP-Seq data.
Nomascus leucogenys was not studied using EST data.
Nomascus leucogenys was not studied using FANTOM5 data.
retro_nleu_1978 was not experimentally validated.
Retrocopy orthology:
Nomascus leucogenys does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
3 parental genes, and
3 retrocopies.