RetrogeneDB ID:

retro_nleu_2126

Retrocopy
location
Organism:Gibbon (Nomascus leucogenys)
Coordinates:GL397330.1:3345956..3346938(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:CLK2
Ensembl ID:ENSNLEG00000012062
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_nleu_2126
AGCAGTAGTGACCGGACACGACGGCGCCGGCGAGAGGACAGCTACCATGTCCAGAGGAGGCGCAGCCGGACATTTAGCTG
CTCGTCTTCGCAGCACAGCAGCCGGAAAGCCAAGAGCGTAGAGGACGACGCTGAGGGCCACCTCATCTACCACGTCGGGG
CCTGGCTACAAGAGCGATATGAAATCGTTAGCACCTTAGGAAAGGGGACCTTCGGCCGAGTTGTACAATGTGTTGACCAT
CGCAGGAGTGGGGCTCGAGTTGCCCTGAAGATCATTAAGAATGTGGGGAAGTGTAAGGAGGCAGCTCAACTTGAGATCAA
CGTGCTGGAGAAAATCAACAAGAAAGACCCTGACAAGAACCTCTGTGTCCAGATGTTTGACTGGTTTGACTACCATGGCC
ATGTGTGTATCTCCTTGGAGCTTCTGGGCCTTAGCACCTTCGATTTCCTCAAAGACAACAACTACCTGCCCTACCCCATC
CACCAAGTGCGCCACATGGCCTTCCAGCTGTGCCAGGCTGTCAAGTTCCTCCATGATAACAAGCTGACACATACAGACCT
CAAGCCTGAAAATATTCTGTTTGTGAATTCAGACTATGAGCTCACCTACAACCTAGAGAAGAAGTGACATGAGCACAGTG
TGAAGAGCACAGCTGTGCGGGTGGGAGACTTTGGCAGTGCCACCTTTGACCATGAGCACCACAGCACCATTGTCTCCACT
CACCATTACCGAGCACCAGAGGTCATCCCTGAGTTGGGCTGGTCACAGCCTTGTGATGTGTGGAGTATAGGCTGCATCAT
CTTTGAGTACTATGTGGGCTTCACCCTCTTCCAGACCCATGATAACAGAGAGCATCTAGCCATGATGGAAAGGATCTTGG
GTCCTATCCCTTCCCGGATGATCCGAAAGACAAGAAAACAGAAATATTTTTACCGAGGGTCGCCTGGATTGGGATGAGAA
CACATCAGCTGGGCGCTATGTT

ORF - retro_nleu_2126 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 90.27 %
Parental protein coverage: 65.53 %
Number of stop codons detected: 1
Number of frameshifts detected 1


Retrocopy - Parental Gene Alignment:

ParentalNSSYRSQRSSRR-KHRRRRRRSRTFSRSSSQHSSRRAKSVEDDAEGHLIYHVGDWLQERYEIVSTLGEGT
.SS.R..R..R.......RRRSRTFS.SSSQHSSR.AKSVEDDAEGHLIYHVG.WLQERYEIVSTLG.GT
RetrocopySSSDRTRRRRREDSYHVQRRRSRTFSCSSSQHSSRKAKSVEDDAEGHLIYHVGAWLQERYEIVSTLGKGT
ParentalFGRVVQCVDHRRGGARVALKIIKNVEKYKEAARLEINVLEKINEKDPDNKNLCVQMFDWFDYHGHMCISF
FGRVVQCVDHRR.GARVALKIIKNV.K.KEAA.LEINVLEKIN.KDPD.KNLCVQMFDWFDYHGH.CIS.
RetrocopyFGRVVQCVDHRRSGARVALKIIKNVGKCKEAAQLEINVLEKINKKDPD-KNLCVQMFDWFDYHGHVCISL
ParentalELLGLSTFDFLKDNNYLPYPIHQVRHMAFQLCQAVKFLHDNKLTHTDLKPENILFVNSDYELTYNLEKKR
ELLGLSTFDFLKDNNYLPYPIHQVRHMAFQLCQAVKFLHDNKLTHTDLKPENILFVNSDYELTYNLEKK.
RetrocopyELLGLSTFDFLKDNNYLPYPIHQVRHMAFQLCQAVKFLHDNKLTHTDLKPENILFVNSDYELTYNLEKK*
ParentalDERSVKSTAVRVVDFGSATFDHEHHSTIVSTRHYRAPEVILELGWSQPCDVWSIGCIIFEYYVGFTLFQT
.E.SVKSTAVRV.DFGSATFDHEHHSTIVST.HYRAPEVI.ELGWSQPCDVWSIGCIIFEYYVGFTLFQT
RetrocopyHEHSVKSTAVRVGDFGSATFDHEHHSTIVSTHHYRAPEVIPELGWSQPCDVWSIGCIIFEYYVGFTLFQT
ParentalHDNREHLAMMERILGPIPSRMIRKTRKQKYFYR-GRLDWDENTSAGRYV
HDNREHLAMMERILGPIPSRMIRKTRKQKYFYR.GRLDWDENTSAGRYV
RetrocopyHDNREHLAMMERILGPIPSRMIRKTRKQKYFYR>GRLDWDENTSAGRYV

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Nomascus leucogenys was not studied using RNA-Seq expression data.
Nomascus leucogenys was not studied using ChIP-Seq data.
Nomascus leucogenys was not studied using EST data.
Nomascus leucogenys was not studied using FANTOM5 data.
retro_nleu_2126 was not experimentally validated.

Retrocopy orthology:
Nomascus leucogenys does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 6 parental genes, and 8 retrocopies.

Species Parental gene accession Retrocopies number
Homo sapiens ENSG000001764441 retrocopy
Gorilla gorilla ENSGGOG000000094381 retrocopy
Nomascus leucogenys ENSNLEG000000112911 retrocopy
Nomascus leucogenys ENSNLEG00000012062 2 retrocopies
retro_nleu_2126 , retro_nleu_3112,
Pan troglodytes ENSPTRG000000014191 retrocopy
Tupaia belangeri ENSTBEG000000002162 retrocopies



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