RetrogeneDB ID: retro_nleu_2391

Retrocopy location

• Organism: Gibbon (Nomascus leucogenys)
• Coordinates: GL397350.1:321048..321598(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: DUSP3
• Ensembl ID: ENSNLEG00000005702
• Aliases: None
• Description: None

Sequence

>retro_nleu_2391
GTGACAGGCCCTTTTGAATGCTCCATGAAAGATCTCAATGACCTGCTCTCAGATAGCAGTGGCTGCTACAACCTCCCAAG
CCAGCCCTGCAGTGAGGTCACCCTGAGGATTTACATGGGCAACACATCTGTGGCTCAGGATATCCCCAAGCTTCAGAAAC
TGGGCAGTATTCATCTCCTGAACACCACTGACGGCAGGTCTTTCATGCACATAAACAATGCCAACTTCTCCAAGGACTCT
GGCATCACCTACCTGGGCATCAAGACCATTGAAGTGCAGGAGTTCAACCTCAGCACCTACTTTGAAAGGGCTACAGACTT
CACTGACCAGGCCTTGGCTCCAAAGAATGGCCAGGTGCTCGTCCAGTTCTGGGAAGTTTACAGCCATCTCCAGCTCTAGT
TATCATGTACCTCATGATTGTCAGAAGTTGGCCATCAAGTCCATCCTGAGTATCATGAGGCAGAACTGTGAGATCAGCCC
CAATGATGGGTTCCTGGCTCAGCTTTGCCATCTCAATGACAAACTAGCCAAGGAGGGGAAGGTGAAACCC

Alignment

ORF - retro_nleu_2391 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 72.19 %
• Parental protein coverage: 100. %
• Number of stop codons detected: 0
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  MSGSFELSVQDLNDLLSDGSGCYSLPSQPCNEVTPRIYVGNASVAQDIPKLQKIGITHVLNAAEGRSFMH
          ..G.FE.S..DLNDLLSD.SGCY.LPSQPC.EVT.RIY.GN.SVAQDIPKLQK.G..H.LN...GRSFMH
Retrocopy VTGPFECSMKDLNDLLSDSSGCYNLPSQPCSEVTLRIYMGNTSVAQDIPKLQKLGSIHLLNTTDGRSFMH

Parental  VNTNANFYKDSGITYLGIKANDTQEFNLSAYFERAADFIDQALAQKNGRVLVHCREGYSR-SPTLVIAYL
          .N.NANF.KDSGITYLGIK....QEFNLS.YFERA.DF.DQALA.KNG.VLV...E.YS..SP.LVI.YL
Retrocopy IN-NANFSKDSGITYLGIKTIEVQEFNLSTYFERATDFTDQALAPKNGQVLVQFWEVYSH<SPALVIMYL

Parental  MM-RQKMDVKSALSIVRQNREIGPNDGFLAQLCQLNDRLAKEGKLKP
          M...QK...KS.LSI.RQN.EI.PNDGFLAQLC.LND.LAKEGK.KP
Retrocopy MI<CQKLAIKSILSIMRQNCEISPNDGFLAQLCHLNDKLAKEGKVKP

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Nomascus leucogenys was not studied using RNA-Seq expression data.

ChIP-Seq

Nomascus leucogenys was not studied using ChIP-Seq data.

EST

Nomascus leucogenys was not studied using EST data.

TSS

Nomascus leucogenys was not studied using FANTOM5 data.

Lab

retro_nleu_2391 was not experimentally validated.

Homology

Retrocopy orthology:

Nomascus leucogenys does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 5 parental genes, and 5 retrocopies.

Species	Parental gene accession	Retrocopies number
Homo sapiens	ENSG00000108861	1 retrocopy	retro_hsap_1541,
Gorilla gorilla	ENSGGOG00000023681	1 retrocopy	retro_ggor_1174,
Macaca mulatta	ENSMMUG00000002351	1 retrocopy	retro_mmul_2205,
Nomascus leucogenys	ENSNLEG00000005702	1 retrocopy	retro_nleu_2391 ,
Pongo abelii	ENSPPYG00000008353	1 retrocopy	retro_pabe_1277,