RetrogeneDB ID: | retro_nleu_2427 | ||
Retrocopylocation | Organism: | Gibbon (Nomascus leucogenys) | |
Coordinates: | GL397354.1:6690876..6691809(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | GAPDH | ||
Ensembl ID: | ENSNLEG00000003825 | ||
Aliases: | None | ||
Description: | Glyceraldehyde-3-phosphate dehydrogenase [Source:UniProtKB/TrEMBL;Acc:G1QVR0] |
Percent Identity: | 79.87 % |
Parental protein coverage: | 92.84 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 5 |
Parental | SGKVDIVAINDP-FIDLNYMVYMFQYDSTHGKFHGTVKAENGKLVINGNPITIFQE-RDPSKIKWGDAGA |
.GKVDI..INDP.FIDLNYMVYMFQYDS.HGKF.GTVKAENGKL...GNP.TIFQ..RDPSK.KWG.AGA | |
Retrocopy | TGKVDIITINDP<FIDLNYMVYMFQYDSIHGKFCGTVKAENGKLGTSGNPTTIFQG<RDPSKNKWGNAGA |
Parental | EYVVESTGVFTTMEKAGAHLQGGAKRVIISAPSADAPMFVMGVNHEKYDNSLKIVSNASCTTNCLAPLAK |
.Y.VE.TG.FTTMEKAGAHLQGGAKRVIISAPSADAPM.VM.VNHE.YDN.LKI.S.ASC.TNCLAPLA. | |
Retrocopy | RYIVEPTGIFTTMEKAGAHLQGGAKRVIISAPSADAPMCVMDVNHENYDNHLKIISSASCITNCLAPLAN |
Parental | VIHDNFGIVEGLMTTVHAITATQKTVDG-PSGKLWRDGRGALQNIIPASTGAAKAVGKVIPELNGKLTGM |
VIHDNFGIVEGLMTTVHAI.ATQK..DG.P.G..W..G.GALQNIIPASTG.AKAVGKVIPELN.KLTGM | |
Retrocopy | VIHDNFGIVEGLMTTVHAIIATQKIADG>PPGN-WHNGCGALQNIIPASTGTAKAVGKVIPELNRKLTGM |
Parental | AFRVPTANVSVVDLTCRLEKPAKYDDIKKVVKQASEG-PLKGILGYT-EHQVVSSDFNSD--THSSTFDA |
.F.V.TAN..VVD.TC.LEKPAKY.DIKKVVKQAS...PLKG.LGY..EHQVVSSD.NSD..THSSTF.A | |
Retrocopy | GFCVLTANMLVVDPTCHLEKPAKYNDIKKVVKQASNA<PLKGTLGYM<EHQVVSSDLNSDTHTHSSTFNA |
Parental | GAGIALNDHFVKLISWYDNEFGYSNRVVDLMSHMASKE |
GAG.ALN.HFV.LISWYDN.FGYSNRVV.L..HMA.KE | |
Retrocopy | GAGTALNGHFVELISWYDNAFGYSNRVVNLRAHMAAKE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |