RetrogeneDB ID: | retro_nleu_2878 | ||
Retrocopylocation | Organism: | Gibbon (Nomascus leucogenys) | |
Coordinates: | GL397459.1:580698..581086(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | NUDT15 | ||
Ensembl ID: | ENSNLEG00000002957 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 83.21 % |
Parental protein coverage: | 79.27 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | MTASAEPRGGRPGVGVGVVVTSCKHPRCVLLGKRKGSVGAGSFQLPGGHLEFGETWEECAQRETWEEAAL |
MTA..EP.G..P.V.V.VVVTSCKHPR.VLLGKRKGS.G.GSFQL.GGHLEF.E.WEECAQRETWEEA.L | |
Retrocopy | MTANVEPQGRPPRVKV*VVVTSCKHPRSVLLGKRKGSFGTGSFQLSGGHLEFSESWEECAQRETWEEA-L |
Parental | HLKNVRFASVVNSFIEKENYHYVTILMKGEVDVTHDSEPKNVEP-EKNESWEWVPWEELPP |
HLKNVRFASVVNSFIEKENYHYVT.LMKGEVDVTHDSEPKNVEP....ESWEWVPWE..PP | |
Retrocopy | HLKNVRFASVVNSFIEKENYHYVTVLMKGEVDVTHDSEPKNVEP>XXXESWEWVPWEQFPP |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000019501 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000009274 | 1 retrocopy | |
Homo sapiens | ENSG00000136159 | 2 retrocopies | |
Gorilla gorilla | ENSGGOG00000008232 | 3 retrocopies | |
Microcebus murinus | ENSMICG00000009583 | 1 retrocopy | |
Mus musculus | ENSMUSG00000033405 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000002957 | 2 retrocopies |
retro_nleu_2878 , retro_nleu_563,
|
Pongo abelii | ENSPPYG00000005353 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000042329 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000006960 | 1 retrocopy |