RetrogeneDB ID:

retro_nleu_2878

Retrocopy
location
Organism:Gibbon (Nomascus leucogenys)
Coordinates:GL397459.1:580698..581086(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:NUDT15
Ensembl ID:ENSNLEG00000002957
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_nleu_2878
ATGACAGCCAACGTGGAGCCGCAGGGGCGGCCGCCGAGAGTCAAAGTCTGAGTTGTGGTGACCAGCTGCAAGCATCCGCG
TTCTGTCCTCCTGGGGAAGAGGAAAGGGTCGTTTGGAACCGGCAGTTTTCAGCTCTCTGGGGGTCATTTGGAGTTCAGTG
AGAGCTGGGAAGAATGTGCTCAAAGGGAAACCTGGGAAGAAGCTCTTCACCTGAAAAATGTTCGCTTTGCCTCAGTTGTG
AATTCTTTCATTGAGAAGGAGAATTACCATTATGTTACTGTATTAATGAAAGGAGAAGTGGACGTGACTCATGATTCAGA
ACCAAAGAATGTAGAGCCTGAAAAAAAATGAAAGTTGGGAGTGGGTTCCCTGGGAACAATTTCCTCCT

ORF - retro_nleu_2878 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 83.21 %
Parental protein coverage: 79.27 %
Number of stop codons detected: 1
Number of frameshifts detected 1


Retrocopy - Parental Gene Alignment:

ParentalMTASAEPRGGRPGVGVGVVVTSCKHPRCVLLGKRKGSVGAGSFQLPGGHLEFGETWEECAQRETWEEAAL
MTA..EP.G..P.V.V.VVVTSCKHPR.VLLGKRKGS.G.GSFQL.GGHLEF.E.WEECAQRETWEEA.L
RetrocopyMTANVEPQGRPPRVKV*VVVTSCKHPRSVLLGKRKGSFGTGSFQLSGGHLEFSESWEECAQRETWEEA-L
ParentalHLKNVRFASVVNSFIEKENYHYVTILMKGEVDVTHDSEPKNVEP-EKNESWEWVPWEELPP
HLKNVRFASVVNSFIEKENYHYVT.LMKGEVDVTHDSEPKNVEP....ESWEWVPWE..PP
RetrocopyHLKNVRFASVVNSFIEKENYHYVTVLMKGEVDVTHDSEPKNVEP>XXXESWEWVPWEQFPP

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Nomascus leucogenys was not studied using RNA-Seq expression data.
Nomascus leucogenys was not studied using ChIP-Seq data.
Nomascus leucogenys was not studied using EST data.
Nomascus leucogenys was not studied using FANTOM5 data.
retro_nleu_2878 was not experimentally validated.

Retrocopy orthology:
Nomascus leucogenys does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 10 parental genes, and 15 retrocopies.

Species Parental gene accession Retrocopies number
Bos taurus ENSBTAG000000195011 retrocopy
Callithrix jacchus ENSCJAG000000092741 retrocopy
Homo sapiens ENSG000001361592 retrocopies
Gorilla gorilla ENSGGOG000000082323 retrocopies
Microcebus murinus ENSMICG000000095831 retrocopy
Mus musculus ENSMUSG000000334051 retrocopy
Nomascus leucogenys ENSNLEG00000002957 2 retrocopies
retro_nleu_2878 , retro_nleu_563,
Pongo abelii ENSPPYG000000053532 retrocopies
Pan troglodytes ENSPTRG000000423291 retrocopy
Tarsius syrichta ENSTSYG000000069601 retrocopy



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