RetrogeneDB ID: retro_nleu_2986

Retrocopy location

• Organism: Gibbon (Nomascus leucogenys)
• Coordinates: GL397545.1:646736..648395(-)
• Located in intron of: ENSNLEG00000015707

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: ANKS6
• Ensembl ID: ENSNLEG00000017015
• Aliases: None
• Description: None

Sequence

>retro_nleu_2986
GCGACGCCGGAGCAGCTGGCTGTGGTGCAGCTGCTGGTGGAGAGGCACGCGGATATTGACAAGCAGGACAGCGTGCATGG
CTGGACGGTCCTCATGAAGGCAACCTACCATGGGAATAAGGAAATTGTCAAATATCTGCTAAACCAAGGGGCCGATGTCA
CTCTTCGTGCAAAAAATGGATACATGGCCTTTGACCTGGTGATGCTGCTGAATGATTCCGACACGGAACTTGTTCGACTG
CTGGCATCTGCCTGCATGCAGGTGAATAAAGACAAAGGCCGGCCGAGCCACCAGCCGCCCCTGCCCCACTCGAAGGTCTG
ACAGCCCTGGAGCATCCCAGTGCTGCCCAATGATAAGGGCGGGCTGAAGTCCTGGTGGAACCGAATGTCCAATCTGTTCC
GAAAGCTCAAACTGATGCAGACGCTGCCACGTGGGCTGTCCAGCAACCAGCCTTTGCCTTTCTCTGACGAGCCTGAGCCA
GCTCTGGACTCCACAATGAGGGCTGCCCCCCAGGACAAGACAAGCCGCTCTGCACTCCCTGATGCAGCCCCTGTGACCAA
AGACAATGGTCCTGGGAGCACAAGCGGAGAAAAGGAAGACACGTTATTGACAACCATGCTTCGAAACGGAGCCCCCCTCA
CCAGACTCCCGAGTGACAAGCTGAAAGCAGTCATCCCCCCATTCCTACCCCCTTCCAGTTTTGAGCTGTGGAGCTCTGAT
CGGTCCCCGATGCATCACAACGGGAAGGCAGACCCCATGAAGACTGTACTGCCCCAGAGAGCCAGCAGGGGCCACCCTGT
GGGCGGCGGGGGCACAGACACTACACTCATCAGGCCTGTTAAATTTCCAAGCCTCTCCAGAAGCCCAGCCTCTGTTGCCA
ATTCTGGAAACTTCAACCACTCGTCTCATTCATCGGGCGGCTCCAGTGGGGTAGGAGGTGTGAGCCGGCACGGTGGGGAG
CTGCTTAACCGTTCAGGTGGCAGCATAGACAACGTCTTATCCCAAATCGCTGCCCAGAGGAAAAAAGCAGCCGGATTATC
GGAGCAGAAACCCAGCCATCGGTCAAGCCCTGTGGGGCCAGCACCGGGGTCCAGCCCTTCTGAGCTTCCAGCCTCTGCTG
CAGGTGGCAGCGTTCCTGTTGGCACGAAATTGGAGACCAGCAAAAGGCCTCCGTCTGGAACTTCCACTACCTCCAAGAGC
ACCTCTCCAACCTTCACGCCCTCCCCCTCACCCAAAGGGCACACTGCAGAGTCCTCAGTGTCTTCCTCGTCATCGCATCA
GCAGTCCAAGAGCAGTGGGGGCTCCAGCAGTGGCACCATCACAGATGAGGATGAACTGACTGGAATCCTTAAGAAATTAT
CACTTGAGAAATATCAGCCCATTTTTGAGGAACAAGAGGTGGACATGGAAGCATTCCTTACGCTGACTGACGGTGACTTG
AAGGAGCTGGGAATTAAGACAGATGGGTCCAGGCAGCAGATTCTGGCAGCGATTTCTGAGCTCAACGCAGGCAAGGGACG
CGAGAGACAAATTTTACAGGAAACCATTCACAACTTTCACTCTTCCTTTGAAAGCAGTGCCAGCAACACCAGGGCCCCTG
GCAGCAGCCCCTCCTTGGCTGGGTGGGTGAGGCCAGAAGAAACTGCCTCCGGCAAGAGG

Alignment

ORF - retro_nleu_2986 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 94.76 %
• Parental protein coverage: 80.38 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  AVTGQLALVQLLVERHADIDKQDSVHGWTALMQATYHGNKEIVKYLLNQGADVTLRAKNGYTAFDLVMLL
          A...QLA.VQLLVERHADIDKQDSVHGWT.LM.ATYHGNKEIVKYLLNQGADVTLRAKNGY.AFDLVMLL
Retrocopy ATPEQLAVVQLLVERHADIDKQDSVHGWTVLMKATYHGNKEIVKYLLNQGADVTLRAKNGYMAFDLVMLL

Parental  NDPDTELVRLLASVCMQVNKDKGRPSHQPPLPHSKGRQPWSIPVLPDDKGGLKSWWNRMSNRFRKLKLMQ
          ND.DTELVRLLAS.CMQVNKDKGRPSHQPPLPHSK..QPWSIPVLP.DKGGLKSWWNRMSN.FRKLKLMQ
Retrocopy NDSDTELVRLLASACMQVNKDKGRPSHQPPLPHSKV*QPWSIPVLPNDKGGLKSWWNRMSNLFRKLKLMQ

Parental  TLPRGLSSNQPLPFSDDPEPALDSTMRAAPQDKISRSALPDAAPVTKDNGPGSTRGEKEDTLLTTMLRNG
          TLPRGLSSNQPLPFSD.PEPALDSTMRAAPQDK.SRSALPDAAPVTKDNGPGST.GEKEDTLLTTMLRNG
Retrocopy TLPRGLSSNQPLPFSDEPEPALDSTMRAAPQDKTSRSALPDAAPVTKDNGPGSTSGEKEDTLLTTMLRNG

Parental  APLTRLPSDKLKAVIPPFLPPSSFELWSSDRSRRRHNGKADPMKTVLPQRASRGHPVGGGGTDTTPVRPV
          APLTRLPSDKLKAVIPPFLPPSSFELWSSDRS...HNGKADPMKTVLPQRASRGHPVGGGGTDTT..RPV
Retrocopy APLTRLPSDKLKAVIPPFLPPSSFELWSSDRSPMHHNGKADPMKTVLPQRASRGHPVGGGGTDTTLIRPV

Parental  KFPSLSRSPASPANSGNFNHSPHSSGGSSGVGGVSRHGGELLNRSGGSIDNVLSQIAAQRKKAAGLSEQK
          KFPSLSRSPAS.ANSGNFNHS.HSSGGSSGVGGVSRHGGELLNRSGGSIDNVLSQIAAQRKKAAGLSEQK
Retrocopy KFPSLSRSPASVANSGNFNHSSHSSGGSSGVGGVSRHGGELLNRSGGSIDNVLSQIAAQRKKAAGLSEQK

Parental  PSHRSSPVGPAPGSSPSELPASPAGGSVPVGKKLETSKRPPSGTSTTSKSTSPTLTPSPSPKGHTAESSV
          PSHRSSPVGPAPGSSPSELPAS.AGGSVPVG.KLETSKRPPSGTSTTSKSTSPT.TPSPSPKGHTAESSV
Retrocopy PSHRSSPVGPAPGSSPSELPASAAGGSVPVGTKLETSKRPPSGTSTTSKSTSPTFTPSPSPKGHTAESSV

Parental  SSSSSHRQSKSSGGSSSGTITDEDELTGILKKLSLEKYQPIFEEQEVDMEAFLTLTDGDLKELGIKTDGS
          SSSSSH.QSKSSGGSSSGTITDEDELTGILKKLSLEKYQPIFEEQEVDMEAFLTLTDGDLKELGIKTDGS
Retrocopy SSSSSHQQSKSSGGSSSGTITDEDELTGILKKLSLEKYQPIFEEQEVDMEAFLTLTDGDLKELGIKTDGS

Parental  RQQILAAISELNAGKGRERQILQETIHNFHSSFESSASNTRAPGNSPSMAGWVRPEETASGKR
          RQQILAAISELNAGKGRERQILQETIHNFHSSFESSASNTRAPG.SPS.AGWVRPEETASGKR
Retrocopy RQQILAAISELNAGKGRERQILQETIHNFHSSFESSASNTRAPGSSPSLAGWVRPEETASGKR

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Nomascus leucogenys was not studied using RNA-Seq expression data.

ChIP-Seq

Nomascus leucogenys was not studied using ChIP-Seq data.

EST

Nomascus leucogenys was not studied using EST data.

TSS

Nomascus leucogenys was not studied using FANTOM5 data.

Lab

retro_nleu_2986 was not experimentally validated.

Homology

Retrocopy orthology:

Nomascus leucogenys does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Nomascus leucogenys	ENSNLEG00000017015	1 retrocopy	retro_nleu_2986 ,