RetrogeneDB ID: retro_nleu_362

Retrocopy location

• Organism: Gibbon (Nomascus leucogenys)
• Coordinates: GL397263.1:47872396..47873222(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: ZNF207
• Ensembl ID: ENSNLEG00000005954
• Aliases: None
• Description: None

Sequence

>retro_nleu_362
AAGAAGAAGCAGCAGCTGAAGCCGTGGTGCTGGTATTGTAATAGAGATTTTGGTGATGAGAAGATCCTTATACAGCACCA
AGAAGCAAAGCATTTTAAATGTCATATATGTCACAAGACATTGTATCCAGGACCTGGCTTAGCTATTCATTGCATGCAGG
TGCATAAAGAAATAATAGATGCTGTACTAAATGCAACACCTGGGATAACAGACATAGAATTGGAAATATATGGTATGGAA
GGTATTCCAGAAAAAGACATGGATGAAGGACGACGACTTCTTGAACAGACACAAGAAAGTCAAAAAAAGAAAGAACAAGA
TGATTCTGATGAATATGATGACAACGACTCTGCAGGCTCAACTTCATTTTAACCACAACCTATTCAATTTCAACAAGGTT
ATATTCCTCCAGTGGCACAGCCAGAACTGCCGCCAGTACCAGGAGCACCAGGAATGCCTCTAGGCATAACTCCATTAATG
CCAGGTGTTCCTCCTCTGATGACAGGAATGCCACCAATTATGCCAGCCATGCCACCTGGATTGCATCATCAAAGAAAATG
CACACAGTCATTTTGCAGTGAAAGCATAATGATGCCAATGGGTGGAATATACCACCTGGACCAGGAATACCACTTCTAAT
GCCTGGAATGTCACCAGGTATCCCCTCCACTCCCCTACCCCCATTCCACATCCTAGAATTCCTCCAGTGACCCAAACGCA
GGCTGTTTCAGCGCCAGGTATTCTTAACAGACCACCTGCACCAACAGCAACTATACCTGCTCCACAGCCTCCAGTTACGA
AGCCTCTTTTCTCCAGTGCTGGACAG

Alignment

ORF - retro_nleu_362 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 83.87 %
• Parental protein coverage: 55.26 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  KKKKQLKPWCWYCNRDFDDEKILIQHQKAKHFKCHICHKKLYTGPGLAIHCMQVHKETIDAVPNAIPGRT
          KKK.QLKPWCWYCNRDF.DEKILIQHQ.AKHFKCHICHK.LY.GPGLAIHCMQVHKE.IDAV.NA.PG.T
Retrocopy KKKQQLKPWCWYCNRDFGDEKILIQHQEAKHFKCHICHKTLYPGPGLAIHCMQVHKEIIDAVLNATPGIT

Parental  DIELEIYGMEGIPEKDMDERRRLLEQKTQESQKKKQQDDSDEYDDDDSAASTSFQPQPVQPQQGYIPPMA
          DIELEIYGMEGIPEKDMDE.RRLLEQ.TQESQKKK.QDDSDEYDD.DSA.STSF.PQP.Q.QQGYIPP.A
Retrocopy DIELEIYGMEGIPEKDMDEGRRLLEQ-TQESQKKKEQDDSDEYDDNDSAGSTSF*PQPIQFQQGYIPPVA

Parental  QPGLPPVPGAPGMPPGIPPLMPGVPPLMPGMPPVMPGMPPGLHHQRKYTQSFCGENIMMPMGGM-MPPGP
          QP.LPPVPGAPGMP.GI.PLMPGVPPLM.GMPP.MP.MPPGLHHQRK.TQSFC.E.IMMPMGG...PPGP
Retrocopy QPELPPVPGAPGMPLGITPLMPGVPPLMTGMPPIMPAMPPGLHHQRKCTQSFCSESIMMPMGGI<IPPGP

Parental  GIPPLMPGMPPGMP----PP-VPRPGIPPMTQAQAVSAPGILNRPPAPTATVPAPQPPVTKPLFPSAGQ
          GIP.LMPGM.PG.P....PP..P.P.IPP.TQ.QAVSAPGILNRPPAPTAT.PAPQPPVTKPLF.SAGQ
Retrocopy GIPLLMPGMSPGIPSTPLPP<IPHPRIPPVTQTQAVSAPGILNRPPAPTATIPAPQPPVTKPLFSSAGQ

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Nomascus leucogenys was not studied using RNA-Seq expression data.

ChIP-Seq

Nomascus leucogenys was not studied using ChIP-Seq data.

EST

Nomascus leucogenys was not studied using EST data.

TSS

Nomascus leucogenys was not studied using FANTOM5 data.

Lab

retro_nleu_362 was not experimentally validated.

Homology

Retrocopy orthology:

Nomascus leucogenys does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 9 parental genes, and 11 retrocopies.

Species	Parental gene accession	Retrocopies number
Cavia porcellus	ENSCPOG00000001728	1 retrocopy	retro_cpor_1464,
Echinops telfairi	ENSETEG00000003828	1 retrocopy	retro_etel_883,
Homo sapiens	ENSG00000010244	1 retrocopy	retro_hsap_2373,
Myotis lucifugus	ENSMLUG00000016085	1 retrocopy	retro_mluc_322,
Nomascus leucogenys	ENSNLEG00000005954	1 retrocopy	retro_nleu_362 ,
Otolemur garnettii	ENSOGAG00000001200	2 retrocopies	retro_ogar_33, retro_ogar_751,
Pongo abelii	ENSPPYG00000008161	1 retrocopy	retro_pabe_2144,
Pan troglodytes	ENSPTRG00000008989	1 retrocopy	retro_ptro_1735,
Ictidomys tridecemlineatus	ENSSTOG00000000712	2 retrocopies	retro_itri_1800, retro_itri_1875,