RetrogeneDB ID: retro_nleu_414

Retrocopy location

• Organism: Gibbon (Nomascus leucogenys)
• Coordinates: GL397264.1:12428751..12429231(-)
• Located in intron of: ENSNLEG00000016681

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: MYOZ3
• Ensembl ID: ENSNLEG00000010386
• Aliases: None
• Description: None

Sequence

>retro_nleu_414
CTCTGCAATGCCCATGGCCCTGAGGGGCAGAACTACCGCTCACAGCTCCACATCTTCCCGGCCTCACCCGGGGCCTCACT
CAGGGGTCCCGAGGGCGCCCACCCTGCGGCCGCCCCTGCTGGGTGCGTCCCCGGCCCCAGCGCCCTGGCGCCAGGCTATG
CGGAGCCGCTGAAGGGCGTCCCGCCAGAGAAGTTCAACCACACCACCATCCCCAAGGGCTACCGCTGCCCCTGGCAGGAA
TTCGTCAGCTACCGGGACTACCAGATCGATGGCCAAAGTCACACCCCCAGCCCCAACGACTACCGAAATTTCAACAAGAC
CCCGGTGCCATTTGGAGGACCCCTCGTGGGGGGCACTTTTCCCAGGCCAGGCACCCCCTTCATCCCGGAGCCCCTCAGTG
GTTTGGAACTCCGTCTCAGACGCAGCTTCAACAGAGTGGCCCAGGGCTGGGTCCGTAACCTCCCAGAGTCCGAGGAGCTG

Alignment

ORF - retro_nleu_414 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 91.93 %
• Parental protein coverage: 64.14 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  IANANGPEGQNYRSELHIFPASPGTSLGGPEGAHPAAAPAGCVPSPSALAPGYAEPLKGVPPEKFNHTAI
          ..NA.GPEGQNYRS.LHIFPASPG.SL.GPEGAHPAAAPAGCVP.PSALAPGYAEPLKGVPPEKFNHT.I
Retrocopy LCNAHGPEGQNYRSQLHIFPASPGASLRGPEGAHPAAAPAGCVPGPSALAPGYAEPLKGVPPEKFNHTTI

Parental  PKGYRCPWQEFVSYRDYQSDGRSHTPSPNDYRNFNKTPVPFGGPLLGGTFPRPGTPFIPEPLSGLELLRL
          PKGYRCPWQEFVSYRDYQ.DG.SHTPSPNDYRNFNKTPVPFGGPL.GGTFPRPGTPFIPEPLSGLE.LRL
Retrocopy PKGYRCPWQEFVSYRDYQIDGQSHTPSPNDYRNFNKTPVPFGGPLVGGTFPRPGTPFIPEPLSGLE-LRL

Parental  RPSFNRVAQGWVRNLPESEEL
          R.SFNRVAQGWVRNLPESEEL
Retrocopy RRSFNRVAQGWVRNLPESEEL

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Nomascus leucogenys was not studied using RNA-Seq expression data.

ChIP-Seq

Nomascus leucogenys was not studied using ChIP-Seq data.

EST

Nomascus leucogenys was not studied using EST data.

TSS

Nomascus leucogenys was not studied using FANTOM5 data.

Lab

retro_nleu_414 was not experimentally validated.

Homology

Retrocopy orthology:

Nomascus leucogenys does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Nomascus leucogenys	ENSNLEG00000010386	1 retrocopy	retro_nleu_414 ,