RetrogeneDB ID: | retro_nleu_438 | ||
Retrocopy location | Organism: | Gibbon (Nomascus leucogenys) | |
| Coordinates: | GL397265.1:25179434..25179919(+) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | None | ||
| Ensembl ID: | ENSNLEG00000004194 | ||
| Aliases: | None | ||
| Description: | None |
Retrocopy-Parental alignment summary:
>retro_nleu_438
ATGCCCATGAGGGGGCCTCCAATTCCTGCTTTACCACCTTCTTGATGTCATTATATTTGGCAGGTTTCTCCAGATGGCAA
GTCAGGTCCATGACCAACACGTTGGCAGTGGAGACATGGAAGGCCATGCCAATGAGCTTCCCATTCAGCTCAGGAGTAAC
CTGGCCCATAGCTTTGGCACCACTAGTAGATGCAGGGATGATGTCCTGGACAGCCACATGGCCATCATGCCACAGTTTCC
CAGAGGGGCCATCCAGGGTCTCCTGGGTGGCAGTGATGGCATGGACTGTGGTTATAAGTTCTTCCATGATGCCAAAGTTG
TCATGGATGACCTTGGCCAGGGGAGCTAAGCAGTTGGTGGTACAGGAGGCTTTGCTGATGATCTTGAGGCTGTTTTTGTA
CTTCTCATGATTCATGCCTATCATGAATAAGGGGGTGTCAGCAGAAAGGGCAGAGATGATGACCCTTTTGCCTCCCTCTT
CTAAG
ORF - retro_nleu_438 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 72.39 % |
| Parental protein coverage: | 100.0 % |
| Number of stop codons detected: | 1 |
| Number of frameshifts detected: | 1 |
Retrocopy - Parental Gene Alignment:
| Parental | MPLRGP-SDACFTTFLMSSYLAGFSRRQVRSTTDTLAVGTRKAMPVSFPFSSGMTLPTALAAPVEAGMMF |
| MP.RGP.S..CFTTFLMS.YLAGFSR.QVRS.T.TLAV.T.KAMP.SFPFSSG.T.P.ALA..V.AGMM. | |
| Retrocopy | MPMRGP<SNSCFTTFLMSLYLAGFSRWQVRSMTNTLAVETWKAMPMSFPFSSGVTWPIALAPLVDAGMMS |
| Parental | WRAPRPSRHSFPEGPSTVFWVAVMAWTVEPHPSTIPKLSWMTLARGAKQLVVQEALLQTKRLLSYFSWFT |
| W.A..PS.HSFPEGPS.V.WVAVMAWTV....S..PKLSWMTLARGAKQLVVQEALL...RL..YFS.F. | |
| Retrocopy | WTATWPSCHSFPEGPSRVSWVAVMAWTVVISSSMMPKLSWMTLARGAKQLVVQEALLMILRLFLYFS*FM |
| Parental | PMTNMGASAEGAEMMTLLAPPCK |
| P..N.G.SAE.AEMMTLL.P..K | |
| Retrocopy | PIMNKGVSAERAEMMTLLPPSSK |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
Nomascus leucogenys was not studied using RNA-Seq expression data.
Nomascus leucogenys was not studied using ChIP-Seq data.
Nomascus leucogenys was not studied using EST data.
Nomascus leucogenys was not studied using FANTOM5 data.
retro_nleu_438 was not experimentally validated.
Retrocopy orthology:
Nomascus leucogenys does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.Parental genes homology:
Parental genes homology involve 1 parental gene, and 41 retrocopies.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Nomascus leucogenys | ENSNLEG00000004194 | 41 retrocopies |
retro_nleu_1019, retro_nleu_1162, retro_nleu_1316, retro_nleu_1514, retro_nleu_154, retro_nleu_1587, retro_nleu_1596, retro_nleu_1656, retro_nleu_1730, retro_nleu_1731, retro_nleu_1750, retro_nleu_186, retro_nleu_1861, retro_nleu_1863, retro_nleu_1864, retro_nleu_1865, retro_nleu_1866, retro_nleu_1867, retro_nleu_1869, retro_nleu_1945, retro_nleu_206, retro_nleu_2166, retro_nleu_2174, retro_nleu_2276, retro_nleu_2432, retro_nleu_2467, retro_nleu_2671, retro_nleu_2684, retro_nleu_2745, retro_nleu_2980, retro_nleu_306, retro_nleu_405, retro_nleu_438 , retro_nleu_459, retro_nleu_489, retro_nleu_541, retro_nleu_599, retro_nleu_626, retro_nleu_783, retro_nleu_810, retro_nleu_995,
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