RetrogeneDB ID:

retro_nleu_589

Retrocopy
location
Organism:Gibbon (Nomascus leucogenys)
Coordinates:GL397268.1:14263176..14264109(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:B3GAT3
Ensembl ID:ENSNLEG00000003956
Aliases:None
Description:beta-1,3-glucuronyltransferase 3 (glucuronosyltransferase I) [Source:HGNC Symbol;Acc:923]


Retrocopy-Parental alignment summary:






>retro_nleu_589
CTACGTGCTGGCCAGCCATGTGACTGCCTTCCTCCCCTGCGGGCAGCAGCCAAGCAGCTATAGCAGAAGGATCTGAGGAT
TTCCCAGCTGCAAGCGGAACTCCGACGGCCACCCCCTGCCCCTGCCCAGCCCCCTGAACCTGAGGCCCTGCCTACTATCT
ATGTTGTTACCCCCACCTATGCCAGGCTGGTACAGAAGGCAGAGCTGGTACGGCTGTCCCAGACACTGAGCCTGGTGCCC
CGGCTGCATTGGCTGCTGGTGGAGGATGCTGAGGGTCCCACCCCGCTGGTCTCAGGGCTGCTGGCTGTCTCTGGCCTCCT
CTTCACACACCTGGTGGTCCTCATGCCCAAAGCCCAGCAGCTTCGGGACGGCAAGCCTGGCTGGGTTCATCCCCGTGGTG
TCAAGCGGCGGAACAAGGCCCTGGACTGGCTCTGGGGCAGAGGGGGTGCTGTGGGTGGGGAGAAGGACCCACCACCACCA
GGGACCCAAGGAGTCGTGTACTTGGCTGACAGTGACAACACCTACAGCCAGGAGCTGTTTGAGGAGATGCGCTGGACCTA
TGGTGTCTCAGTGTGGCCTGTGGGGCTGGTGGGTGGCCTGCGATTTGAGGGCCCTCAGGTACAGGATGGCTGGGTAGTGG
GCTTCCACAAAGTATGGGAGCCCAACAGGCCCTTCCCTGTGGATATGGCCGGATTTGCCGTGGCCCTGCCCTTGCTATTA
GCTAAGCCCAATGCCCAGTTTGATTCCACTGCTCCCCGGAGCCACCTGGAGAGCAGTCTTCTAAGCCACCTTGTGGATCC
CAAGGACCTGGAGCCACAGGCTGCCAACTGCACTCGGGTACTGATGTCGCTTACACCAACAGAGAAGCCCAAGATGAAGC
AGGAGGAGCAGCTGCAACGGCAGGGCCGGGGCTCAGACCCAGCAATTGAGGTG

ORF - retro_nleu_589 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 91.32 %
Parental protein coverage: 96.58 %
Number of stop codons detected: 1
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalVQLGQPCDCLPPLRAAAEQLRQKDLRISQLQAELRRPPPAPAQPPEPEALPTIYVVTPTYARLVQKAELV
...GQPCDCLPPLRAAA.QL.QKDLRISQLQAELRRPPPAPAQPPEPEALPTIYVVTPTYARLVQKAELV
RetrocopyLRAGQPCDCLPPLRAAAKQL*QKDLRISQLQAELRRPPPAPAQPPEPEALPTIYVVTPTYARLVQKAELV
ParentalRLSQTLSLVPRLHWLLVEDAEGPTPLVSGLLAASGLLFTHLVVLTPKAQRLREGEPGWVHPRGVEQRNKA
RLSQTLSLVPRLHWLLVEDAEGPTPLVSGLLA.SGLLFTHLVVL.PKAQ.LR.G.PGWVHPRGV..RNKA
RetrocopyRLSQTLSLVPRLHWLLVEDAEGPTPLVSGLLAVSGLLFTHLVVLMPKAQQLRDGKPGWVHPRGVKRRNKA
ParentalLDWLRGRGGAVGGEKDPPPPGTQGVVYFADDDNTYSRELFEEMRWTRGVSVWPVGLVGGLRFEGPQVQDG
LDWL.GRGGAVGGEKDPPPPGTQGVVY.AD.DNTYS.ELFEEMRWT.GVSVWPVGLVGGLRFEGPQVQDG
RetrocopyLDWLWGRGGAVGGEKDPPPPGTQGVVYLADSDNTYSQELFEEMRWTYGVSVWPVGLVGGLRFEGPQVQDG
ParentalLVVGFHTAWEPNRPFPVDMAGFAVALPLLLAKPSAQFDSTAPRGHLESSLLSHLVDPKDLEPRAANCTRV
.VVGFH..WEPNRPFPVDMAGFAVALPLLLAKP.AQFDSTAPR.HLESSLLSHLVDPKDLEP.AANCTRV
RetrocopyWVVGFHKVWEPNRPFPVDMAGFAVALPLLLAKPNAQFDSTAPRSHLESSLLSHLVDPKDLEPQAANCTRV
ParentalLVWHTRTEKPKMKQEEQLQRQGRGSDPAIEV
L...T.TEKPKMKQEEQLQRQGRGSDPAIEV
RetrocopyLMSLTPTEKPKMKQEEQLQRQGRGSDPAIEV

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Nomascus leucogenys was not studied using RNA-Seq expression data.
Nomascus leucogenys was not studied using ChIP-Seq data.
Nomascus leucogenys was not studied using EST data.
Nomascus leucogenys was not studied using FANTOM5 data.
retro_nleu_589 was not experimentally validated.

Retrocopy orthology:
Nomascus leucogenys does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 5 parental genes, and 5 retrocopies.

Species Parental gene accession Retrocopies number
Homo sapiens ENSG000001495411 retrocopy
Gorilla gorilla ENSGGOG000000136041 retrocopy
Nomascus leucogenys ENSNLEG00000003956 1 retrocopy
retro_nleu_589 ,
Pongo abelii ENSPPYG000000259071 retrocopy
Pan troglodytes ENSPTRG000000396651 retrocopy



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