RetrogeneDB ID: retro_nleu_703

Retrocopy location

• Organism: Gibbon (Nomascus leucogenys)
• Coordinates: GL397270.1:10026231..10026538(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSNLEG00000007969
• Aliases: None
• Description: None

Sequence

>retro_nleu_703
TGTGCTGTGACCCAGCCGAAGGGCAGGTATAGAAGGCACAGCAAACACGAGTCCCTCTGACCTTCTGGGAGCCCCTCTCT
GGGATTCTCTCCCAGCCTCTGGCTGTGGACACAGAGACACGGGCATTTCAGGTAGCCAGGCCAGGAGATGGGTCCACCAG
GGACCTGGCACCTGAATCCTTGTCCTCTAGTGGGGAATGCCCGCCTCAGCCTCACAGCAAAGTCAGCTCCTAGGCATGGG
AAACCCCAGTGTGGATTTCCTGAATAATGCAGGGGAGAGTGTGGCAGCTACCCTCAGCCCTCTGGGC

Alignment

ORF - retro_nleu_703 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 50.96 %
• Parental protein coverage: 67.11 %
• Number of stop codons detected: 2
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  CSVCEGKGLHRGHTKLAFPSPFGHLSEGFSHSRWLRKMKHGHFGWPGWEMGPPGNWSPRP-PRAGDARPG
          C.V...KG..R.H.K.....P.G..S.GFS.S.WL....HGHF..PG.EMGPPG.W...P.P..G.AR..
Retrocopy CAVTQPKGRYRRHSKHESL*PSGSPSLGFSPSLWLWTQRHGHFR*PGQEMGPPGTWHLNPCPLVGNARLS

Parental  PTAESASAPSEDPSVNF-LKNVGESVAAALSPLG
          .TA.SA......P...F.L.N.GESVAA.LSPLG
Retrocopy LTAKSAPRHGK-PQCGF>LNNAGESVAATLSPLG

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Nomascus leucogenys was not studied using RNA-Seq expression data.

ChIP-Seq

Nomascus leucogenys was not studied using ChIP-Seq data.

EST

Nomascus leucogenys was not studied using EST data.

TSS

Nomascus leucogenys was not studied using FANTOM5 data.

Lab

retro_nleu_703 was not experimentally validated.

Homology

Retrocopy orthology:

Nomascus leucogenys does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 3 parental genes, and 3 retrocopies.

Species	Parental gene accession	Retrocopies number
Monodelphis domestica	ENSMODG00000003806	1 retrocopy	retro_mdom_1849,
Nomascus leucogenys	ENSNLEG00000007969	1 retrocopy	retro_nleu_703 ,
Rattus norvegicus	ENSRNOG00000003147	1 retrocopy	retro_rnor_2916,