RetrogeneDB ID: retro_nleu_75

Retrocopy location

• Organism: Gibbon (Nomascus leucogenys)
• Coordinates: GL397371.1:5157920..5158979(+)
• Located in intron of: ENSNLEG00000000959

Retrocopy information

• Ensembl ID: ENSNLEG00000019039
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: ENSG00000142453
• Ensembl ID: ENSNLEG00000012371
• Aliases: None
• Description: None

Sequence

>retro_nleu_75
GGTGGCGCGGGGTCAGCGGGCCTGGGCGGAGCGGGGCCCTGCGCGGCCGTGTCCATGTTCCCCGGCGGCCGCCTCCTCAC
CATCGGCGACGCGAACGGCGAGATCCAGCTGCACGCGGAGCAGCAGGCGCTGCGCCTCGAGGTGCGCGCCGGCCCGGACG
CGGCGGGAATCGCCCTCTACAGCCATGAAGATGTGTGTGTCTTTAAGTGCTCAGTGTCCCGAGAGACAGAGTGCAGCCAT
GTGGGCAAGCAGTCCTTCATCATCACCCTGGGCTGCAACAGTGTCCTCATCCAGTTCGCCACACCCAACGATTTCTGTTC
CTTCTACAACATCCTGAAAACCTGCCGGGGCCACACCCTGGAGCGGTCCGTGTTCAGTGAGCGGACGGAGGAGTCTTCTG
CCGTGCAGTACTTCCAGTTTTATGGCTACCTGTCCCAGCAGCAGAACATGATGCAGGACTACGTGCGGACAGGCACCTAC
CAGCGCGCCATCCTGCAAAACCACACCGACTTCAAGGACAAGATCGTTCTTGATGTTGGCTGTGGCTCTGGGATCCTGTC
GTTTTTTGCCGCCCAAGCTGGAGCACGGAAAATCTACGCGGTGGAGGCCAGCACCACGGCCCAGCACGCCGAGGTCTTGG
TGAAGAGTAACAACCTGACGGACCACATCGTGGTCATCCCGGGCAAGGTGGAGGAGGTGTCACTCCCCGAGCAGGTGGAC
ATCATCATCTCGGAGCCCATGGGCTACATGCTCTTCAACGAGCGCATGCTGGAGAGCTACCTCCACGCCAAGAAGTACCT
GAAGCCCAGCGGAAACATGTTTCCTACCATTGGTGACGTCCACCTTGCACCCTTCACGGATGAACAGCTCTACATGGAGC
AGTTCACCAAGGCCAACTTCTGGTACCAGCCATCGTTCCACAGAGTGGACCTGTCGGCCCTCCGAGGTGCCGGGGTGGAT
GAGTATTTCCGGCAGCCTGTGGTGGACACATTTGACATCCGGATCCTGATGGCCAAGTCTATCAAGTACACGGTGAACTT
CTTAGAAGCCAAAGTTGGG

Alignment

ORF - retro_nleu_75 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 97.19 %
• Parental protein coverage: 56.84 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  EIQRHAEQQALRLEVRAGPDAAGIALYSHEDVCVFKCSVSRETECSRVGKQSFIITLGCNSVLIQFATPN
          EIQ.HAEQQALRLEVRAGPDAAGIALYSHEDVCVFKCSVSRETECS.VGKQSFIITLGCNSVLIQFATPN
Retrocopy EIQLHAEQQALRLEVRAGPDAAGIALYSHEDVCVFKCSVSRETECSHVGKQSFIITLGCNSVLIQFATPN

Parental  DFCSFYNILKTCRGHTLERSVFSERTEESSAVQYFQFYGYLSQQQNMMQDYVRTGTYQRAFLQNHTDFKD
          DFCSFYNILKTCRGHTLERSVFSERTEESSAVQYFQFYGYLSQQQNMMQDYVRTGTYQRA.LQNHTDFKD
Retrocopy DFCSFYNILKTCRGHTLERSVFSERTEESSAVQYFQFYGYLSQQQNMMQDYVRTGTYQRAILQNHTDFKD

Parental  KIVLDVGCGSGILSFFAAQAGARKIYAVEASTMAQHAEVLVKSNNLTDRIVVIPGKVEEVSLPEQVDIII
          KIVLDVGCGSGILSFFAAQAGARKIYAVEAST.AQHAEVLVKSNNLTD.IVVIPGKVEEVSLPEQVDIII
Retrocopy KIVLDVGCGSGILSFFAAQAGARKIYAVEASTTAQHAEVLVKSNNLTDHIVVIPGKVEEVSLPEQVDIII

Parental  SEPMGYMLFNERMLESYLHAKKYLKPSGNMFPTIGDVHLAPFTDEQLYMEQFTKANFWYQPSFHGVDLSA
          SEPMGYMLFNERMLESYLHAKKYLKPSGNMFPTIGDVHLAPFTDEQLYMEQFTKANFWYQPSFH.VDLSA
Retrocopy SEPMGYMLFNERMLESYLHAKKYLKPSGNMFPTIGDVHLAPFTDEQLYMEQFTKANFWYQPSFHRVDLSA

Parental  LRGAAVDEYFRQPVVDTFDIRILMAKSVKYTVNFLEAKEG
          LRGA.VDEYFRQPVVDTFDIRILMAKS.KYTVNFLEAK.G
Retrocopy LRGAGVDEYFRQPVVDTFDIRILMAKSIKYTVNFLEAKVG

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Nomascus leucogenys was not studied using RNA-Seq expression data.

ChIP-Seq

Nomascus leucogenys was not studied using ChIP-Seq data.

EST

Nomascus leucogenys was not studied using EST data.

TSS

Nomascus leucogenys was not studied using FANTOM5 data.

Lab

retro_nleu_75 was not experimentally validated.

Homology

Retrocopy orthology:

Nomascus leucogenys does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 3 parental genes, and 3 retrocopies.

Species	Parental gene accession	Retrocopies number
Monodelphis domestica	ENSMODG00000006104	1 retrocopy	retro_mdom_1846,
Nomascus leucogenys	ENSNLEG00000002986	1 retrocopy	retro_nleu_2941,
Nomascus leucogenys	ENSNLEG00000012371	1 retrocopy	retro_nleu_75 ,