RetrogeneDB ID: retro_nleu_794

Retrocopy location

• Organism: Gibbon (Nomascus leucogenys)
• Coordinates: GL397273.1:35852127..35853003(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: MAPK1IP1L
• Ensembl ID: ENSNLEG00000012787
• Aliases: None
• Description: None

Sequence

>retro_nleu_794
GAGGAGCCGCGCGCTGCTGGTGCTGTTGCCGCCGCTGCTCTCGCTGCGGTCACTCAGGCTGCGCCCGCTTCTTCAGGGCC
CAGTCCCTTGGACCCATCGCTGCTTCTAGACCCTACTGCAGTCTTGGATATTGCCGGGAAAATGTCTGATGAATTTTCGT
TGGCAGATGCACTACCTGAACACTCCCCTGCCAAAACCTCTTCTGTGAGCAATACAAAACCTGGCCAACCTCCTCAAAGC
TGACCAGGCTCCAACCATTGGAATAATCCGAGTGCTCCACCTTCGGTGCCATCTGGACTCCCATCAAGTGTAACACCCTC
CACTGTGCCTTTTGGACCAGTACCAACAGGAATATATCTCTCCGTGCCTCCCACCGGACCACCTCCAGAACCCCCAGCAC
CCTTTACTCCTTCTGGACCATCATGCCGCCCACCTGGTGGTCCTTATCCAGCCCCAACTGTGCCAGGCCCTGGCCCTATA
GGGCCATATTCTACACCAAATATGCGCTTTCCAGAGCTACCCAGACCATATGGTGCACCCACAGATCCAGCTGCAGCTGG
TCCTTTAGGTCCCTGGGGATCCATGTCTTCTGGACCTTGGGTGCCAGGAATGGGAGGGCAGTATCCTACCCCTAATATGC
CATATCCATCTCCAGGGCCATATCCCGTTCCTCCTCCTCCCCAAGCCTCTGGGGCAGCACCACCTGTTCCATGGGGCACC
GTTCCACTAGGAGCCTGGGGACCACCAGCACCATATCCTGCCCCTACAGGATCATATCCCACACCAGGACTCTATCCTAC
TCCCAGTAATCCTTTCCAAGTGCCTTCAGGACCTTCTGGTACTCCACCGATGCCTGGTGGCCCCCATTCTTACCAT

Alignment

ORF - retro_nleu_794 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 90.75 %
• Parental protein coverage: 96.05 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  EEPRAAGAVAAAALAAVSQAVPASSGPSSSDPSPLLDPTAVSDIAGKMSDEFSLADALPEHSPAKTSAVS
          EEPRAAGAVAAAALAAV.QA.PASSGPS..DPS.LLDPTAV.DIAGKMSDEFSLADALPEHSPAKTS.VS
Retrocopy EEPRAAGAVAAAALAAVTQAAPASSGPSPLDPSLLLDPTAVLDIAGKMSDEFSLADALPEHSPAKTSSVS

Parental  NTKPGQPPQGWPGSNPWNNPSAPSSVPSGLPPSATPSTVPFGPAPTGMYPSVPPTGPPPGPPAPFPPSGP
          NTKPGQPPQ..PGSN.WNNPSAP.SVPSGLP.S.TPSTVPFGP.PTG.Y.SVPPTGPPP.PPAPF.PSGP
Retrocopy NTKPGQPPQS*PGSNHWNNPSAPPSVPSGLPSSVTPSTVPFGPVPTGIYLSVPPTGPPPEPPAPFTPSGP

Parental  SCPPPGGPYPAPTVPGPGPTGPYPTPNMPFPELPRPYGAPTDPAAAGPLGPWGSMSSGPWAPGMGGQYPT
          SC.PPGGPYPAPTVPGPGP.GPY.TPNM.FPELPRPYGAPTDPAAAGPLGPWGSMSSGPW.PGMGGQYPT
Retrocopy SCRPPGGPYPAPTVPGPGPIGPYSTPNMRFPELPRPYGAPTDPAAAGPLGPWGSMSSGPWVPGMGGQYPT

Parental  PNMPYPSPGPYPAPPPPQAPGAAPPVPWGTVPPGAWGPPAPYPAPTGSYPTPGLYPTPSNPFQVPSGPSG
          PNMPYPSPGPYP.PPPPQA.GAAPPVPWGTVP.GAWGPPAPYPAPTGSYPTPGLYPTPSNPFQVPSGPSG
Retrocopy PNMPYPSPGPYPVPPPPQASGAAPPVPWGTVPLGAWGPPAPYPAPTGSYPTPGLYPTPSNPFQVPSGPSG

Parental  APPMPGGPHSYH
          .PPMPGGPHSYH
Retrocopy TPPMPGGPHSYH

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Nomascus leucogenys was not studied using RNA-Seq expression data.

ChIP-Seq

Nomascus leucogenys was not studied using ChIP-Seq data.

EST

Nomascus leucogenys was not studied using EST data.

TSS

Nomascus leucogenys was not studied using FANTOM5 data.

Lab

retro_nleu_794 was not experimentally validated.

Homology

Retrocopy orthology:

Nomascus leucogenys does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 3 parental genes, and 4 retrocopies.

Species	Parental gene accession	Retrocopies number
Nomascus leucogenys	ENSNLEG00000012787	1 retrocopy	retro_nleu_794 ,
Oryctolagus cuniculus	ENSOCUG00000004003	1 retrocopy	retro_ocun_1030,
Pongo abelii	ENSPPYG00000005836	2 retrocopies	retro_pabe_2895, retro_pabe_881,