RetrogeneDB ID:

retro_nleu_948

Retrocopy
location
Organism:Gibbon (Nomascus leucogenys)
Coordinates:GL397277.1:14221058..14221490(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:AK3
Ensembl ID:ENSNLEG00000008885
Aliases:None
Description:Adenylate kinase B [Source:UniProtKB/TrEMBL;Acc:G1RC81]


Retrocopy-Parental alignment summary:






>retro_nleu_948
GGGGCTTCTGGGAGGCTACTCACAATGTGATCATGGGGGCCAGGCTCCAGCAAGCACACCCTGCCATTGTGCATCATCAA
ACCCTTTGAACTCAACCACGTTTCCCACGAGGATCTGCCGAGAGGCAATATGTGGAGGGACACAGAGATTTGTCTGCTGG
CCAAGACTGTCATTGACCAGGGTAAGCTCATACCAGGTGACGTTATGATGTGACTGACTTCACACAAGCTGAAAAATCTC
ACCCAGTCTCACTGGCTGTTGCATGGTTTCACCAGGACACTTCCACAGGCTGAAGGCCTAGATTGAATTTATCAGATACA
CCTGATGATGAACCCGAACATGCAGTTTGAGGTCATCAAGCTACGCCTCACTGTTTGCTGGATTCATCCAGCCAATAGCC
TAGTTAACGACCTCGAATTCAACTCTCCAAAA

ORF - retro_nleu_948 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 60. %
Parental protein coverage: 63.88 %
Number of stop codons detected: 3
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalGASARLLRAVIMGAPGSGKGTVSSRITTHFELKHLSSGDLLRDNMLRGTEIGVLAKAFIDQGKLIPDDVM
GAS.RLL.....G.PGS.K.T....I...FEL.H.S..DL.R.NM.R.TEI..LAK..IDQGKLIP.DVM
RetrocopyGASGRLLTM*SWG-PGSSKHTLPLCIIKPFELNHVSHEDLPRGNMWRDTEICLLAKTVIDQGKLIPGDVM
ParentalTRLALHELKNLTQYSWLLDGFPRTLPQAEALDRAYQIDTVINLNVPFEVIKQRLTARWIHPASGRVYNIE
..L..H.LKNLTQ..WLL.GF.RTLPQAE.LD..YQI....N.N..FEVIK.RLT..WIHPA...V...E
RetrocopyM*LTSHKLKNLTQSHWLLHGFTRTLPQAEGLD*IYQIHLMMNPNMQFEVIKLRLTVCWIHPANSLVNDLE
ParentalFNPPK
FN.PK
RetrocopyFNSPK

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Nomascus leucogenys was not studied using RNA-Seq expression data.
Nomascus leucogenys was not studied using ChIP-Seq data.
Nomascus leucogenys was not studied using EST data.
Nomascus leucogenys was not studied using FANTOM5 data.
retro_nleu_948 was not experimentally validated.

Retrocopy orthology:
Nomascus leucogenys does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 25 parental genes, and 50 retrocopies.

Species Parental gene accession Retrocopies number
Ailuropoda melanoleuca ENSAMEG000000026403 retrocopies
Bos taurus ENSBTAG000000171471 retrocopy
Callithrix jacchus ENSCJAG000000111881 retrocopy
Equus caballus ENSECAG000000112352 retrocopies
Echinops telfairi ENSETEG000000008291 retrocopy
Felis catus ENSFCAG000000280632 retrocopies
Homo sapiens ENSG000001478533 retrocopies
Gorilla gorilla ENSGGOG000000281223 retrocopies
Loxodonta africana ENSLAFG000000011261 retrocopy
Microcebus murinus ENSMICG000000131123 retrocopies
Myotis lucifugus ENSMLUG000000172721 retrocopy
Macaca mulatta ENSMMUG000000001432 retrocopies
Mustela putorius furoENSMPUG000000050062 retrocopies
Nomascus leucogenys ENSNLEG00000008885 3 retrocopies
retro_nleu_2638, retro_nleu_2653, retro_nleu_948 ,
Nomascus leucogenys ENSNLEG000000151633 retrocopies
Oryctolagus cuniculus ENSOCUG000000114111 retrocopy
Otolemur garnettii ENSOGAG000000074772 retrocopies
Pongo abelii ENSPPYG000000192453 retrocopies
Pan troglodytes ENSPTRG000000207425 retrocopies
Pteropus vampyrus ENSPVAG000000157511 retrocopy
Sus scrofa ENSSSCG000000235951 retrocopy
Ictidomys tridecemlineatus ENSSTOG000000000211 retrocopy
Tupaia belangeri ENSTBEG000000080543 retrocopies
Tursiops truncatus ENSTTRG000000165241 retrocopy
Vicugna pacos ENSVPAG000000091871 retrocopy



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