RetrogeneDB ID: retro_nleu_979

Retrocopy location

• Organism: Gibbon (Nomascus leucogenys)
• Coordinates: GL397278.1:2644068..2645039(+)
• Located in intron of: ENSNLEG00000009348

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: TEKT3
• Ensembl ID: ENSNLEG00000008299
• Aliases: None
• Description: None

Sequence

>retro_nleu_979
GAAATGATCGGAGAGACAAATGCACGCACTGATGTGAAGAAAAGACTGCAGCGGGCTTTGATGGAGACTGAGCCCTTCTG
CAGGTAGCCCGAGAATGTCCATTTCAGCGAGAAAAGAGAATGGGAATCGATCCAGTCCACGATGAAGTGGAAACACAGCT
GCTGACGGAACTTGGTACTATTCTGTTTTGTCAAGAAAGAACGAAGACAGTTTGGATAACGCTATTGCCCAACTTGCGGC
TGACAGAGCGTCCCAGCGTTAGCTGGAGAAGGACCTGAGTGACAAGCAGATGGCCTTCCAGATCCACGACAAAGCCACCA
CCTGCACAACACGTCAGATGGTGTCGGCTCCTTCCGCGGAGTGCAGAGGGTCGATGCAACGGTCTCAGTGCCCGGGTCCT
GGGCCAGATTTACAGATAACAGTATTTTCCCCTCCCGGAGTGAACAGGCAGCTTCCGCTCGACTTAGAGACGACATTGAA
CACCTCTTGGTTGTGACTGCCAATGAGATGTGGAGTCAGTTCAACAAAGTGAACCTGTCTTTCACCCATCACCTTGCTGA
GACTGTAGATGCTAAGAGTAAGATTCAGATGCCCTTAACAAAGGCCGTGCAGGAGGTTTTCCAGACTGAAATGACCGTAG
AATCCATCAAGAAGGCCATCGAGGACAAGACTGCTTTCCTGAAGGTGGCTCGGACCAGACTGGACGAGCGCACAAGACAG
CCGATCATTGGGTTCTGCCGAGACATGGCTCAGCTACGCCTTGTTCACGAGGTGCACGAGGTTGGCGACACCATCCAGAC
CCTGCAGCAGCGCCTGAGGGATGCAGAGGACACCCTGCAGTCGCTGGTCAACACCAAAGCCATCCTCGAGTATGACCTGG
CTGTCAAAGCCAATTCCCTGTACATCGACCAGAAAACATGCATGGCATGCACAAGAGCTACCCCAACACCCTCTGGCTGG
TGGGCTTCTGC

Alignment

ORF - retro_nleu_979 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 76.6 %
• Parental protein coverage: 66.19 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 4

Retrocopy - Parental Gene Alignment:

Parental  EMIGETNALTDVKKRLERALMETE-APLQVARECLFQREKRMGINLVHDEAEKHL-EEVDTILCCQETMK
          EMIGETNA.TDVKKRL.RALMETE.A.LQVAREC.FQREKRMGI..VHDE.E..L..E..TIL.CQE..K
Retrocopy EMIGETNARTDVKKRLQRALMETE<ALLQVARECPFQREKRMGIDPVHDEVETQLLTELGTILFCQERTK

Parental  L-HLDKAIAQLAADRASQHELENDLSDKQVAYQIDNKC-HHLHNTSDGVGYFRGVERVDATVSVPESWAK
          ...LD.AIAQLAADRASQ..LE.DLSDKQ.A.QI..K..HHLHNTSDGVG.FRGV.RVDATVSVP.SWA.
Retrocopy T<SLDNAIAQLAADRASQR*LEKDLSDKQMAFQIHDKA<HHLHNTSDGVGSFRGVQRVDATVSVPGSWAR

Parental  FTDDNIFLSQSERATSTKLLDDIENLLVVTANEMWNQFNKVNLSFTNRIAETADAKNKIQMHLAKTLQEI
          FTD..IF.S.SE.A.S..L.DDIE.LLVVTANEMW.QFNKVNLSFT...AET.DAK.KIQM.L.K..QE.
Retrocopy FTDNSIFPSRSEQAASARLRDDIEHLLVVTANEMWSQFNKVNLSFTHHLAETVDAKSKIQMPLTKAVQEV

Parental  FQTEMTIESIKKAIKDKTAFLKVAQSRLDERTRWPNIELCRDMAQLRLVNEVHEVDDTIQTLQQCLRDAE
          FQTEMT.ESIKKAI.DKTAFLKVA..RLDERTR.P.I..CRDMAQLRLV.EVHEV.DTIQTLQQ.LRDAE
Retrocopy FQTEMTVESIKKAIEDKTAFLKVARTRLDERTRQPIIGFCRDMAQLRLVHEVHEVGDTIQTLQQRLRDAE

Parental  DSLQGLVNTKATLEYDLVVKANSLYIDQKKCMS-MRKSYP-TLRLFGFC
          D.LQ.LVNTKA.LEYDL.VKANSLYIDQK.CM..M.KSYP.TL.L.GFC
Retrocopy DTLQSLVNTKAILEYDLAVKANSLYIDQKTCMA<MHKSYPNTLWLVGFC

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Nomascus leucogenys was not studied using RNA-Seq expression data.

ChIP-Seq

Nomascus leucogenys was not studied using ChIP-Seq data.

EST

Nomascus leucogenys was not studied using EST data.

TSS

Nomascus leucogenys was not studied using FANTOM5 data.

Lab

retro_nleu_979 was not experimentally validated.

Homology

Retrocopy orthology:

Nomascus leucogenys does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Nomascus leucogenys	ENSNLEG00000008299	1 retrocopy	retro_nleu_979 ,