>retro_obra_21
ATGGGTTCGACGACCAAACCGCGCGGCGTCGCGCTCGCGGCGACGCTCATCTTCTTCGCCCTCCTGTTCGTCGCCGGCGC
TTCCGTTAAGCTGCATCGCTCTGAGCGCCGTACGTCGGCCGCTGCCGGCGACGAGATCGGATGTCTTCTCGCGCGCAAGA
TGCTGCGCGTCAAGGCGCGGACGGGGGAGGCTAGCGTGACCATGGCGCGGCAAGATGATGATCAGCGTCGGAGCAGCCGC
ACGGCCGACGCCGTGGCGCCGACGACGTCCAGCGGGGGTCCTCTTCCGGCCGGCATTGTGCATGGCACGTCCAACCTCGA
GATGGAGCCGATGGTCGGCGACGTCCCCGAGAAGCGCGGCGGTGGGGCGAGGGCGAGCAAGAAGAGCCTCCTGGCCGTCC
CCGTTGGGATCAAGAACAAGGCCCCCGTGGACAAGCTGGTGTCCAAGTTCCCCGCCGAGGAGTTCGCCGTGATGCTGTTC
CACTACGACGGCGCCGTGGAGCAGTGGAGCGACGTGGAGTGGCACGGCCGCGCGGTGCACGTGGCGGCGCCCGGCCAGAC
CAAGTGGTGGTTCGCCAAGCGGTTCCTGCACCCGGACGTGGTGGCTGAGTACGACTACGTCTTCCTCTGGGACGAGGACG
TCGAGGTGGACGCCTTCGACCCGCTCCGCTACCTCGCCGTCGTCAGGCGGGAAGGCCTCGAGGTCTCGCAGCCGGCGCTG
GGGCGCGGCTCGGAGATCCACCACGGCATCACCGTCCGGTCGGCGGCCGGCGGCGGCGTGCACCGGCGGTTCTACAGGCC
GTCCGGGCCGCGGTGCGACGGCGAGAGCACGGCGCCGCCGTGCACCGGGTGGGTGGAGATGATGGTGCCCGTGTTCTCCC
GCGCGGCGTGGCGGTGCGCGTGGGGCATGGTGCAGAACGACCTCGTCCACGCGTGGGGCCTCGACTACAAGCTCGGCTAC
TGGCCCGGCGGAGACCGGACGCTCAAGGTCGGCGTCGTCGACAGCGAGTACGTCTTCCACCGTGGCGTCCCCACCCTCGG
CGGCGGCGGTGGCTCCGCCGCCCCCGCCTTCCGGGCGGCGGTGAGGCGGCGCTCGTACGCCGAGATGCAGATATTCAACC
GGAGGTGGAAGCAGGCCGTCGCCGAGGACGCCTCGTGGACCGACCCTTACCCCGAGCATTGA
ORF - retro_obra_21 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
68.83 % |
Parental protein coverage: |
72.27 % |
Number of stop codons detected: |
0 |
Number of frameshifts detected |
0 |
Retrocopy - Parental Gene Alignment:
Parental | SGSEPLPKGIVQDKSNFEMESLGGN-PERRSVAGRPAK-SLLAIPVGIKQKAVVDKLVSKFPGDRFTVML |
| S...PLP.GIV...SN.EME...G..PE.R....R..K.SLLA.PVGIK.KA.VDKLVSKFP...F.VML |
Retrocopy | SSGGPLPAGIVHGTSNLEMEPMVGDVPEKRGGGARASKKSLLAVPVGIKNKAPVDKLVSKFPAEEFAVML |
|
Parental | FHYDGAVDGWRDLRWSDRAIHVAAIDQTKWWFGKRFLHPDMVADYDYIFLWDEDIEVDGFDPIRYLKVVK |
| FHYDGAV..W.D..W..RA.HVAA..QTKWWF.KRFLHPD.VA.YDY.FLWDED.EVD.FDP.RYL.VV. |
Retrocopy | FHYDGAVEQWSDVEWHGRAVHVAAPGQTKWWFAKRFLHPDVVAEYDYVFLWDEDVEVDAFDPLRYLAVVR |
|
Parental | REGLEISQPALDRRSQIHHRLTLRSRKGQ-VHRRFYKTRGGGRCDGNSTGPPCTGWVEMMVPVFSRAAWR |
| REGLE.SQPAL.R.S.IHH..T.RS..G..VHRRFY....G.RCDG.ST.PPCTGWVEMMVPVFSRAAWR |
Retrocopy | REGLEVSQPALGRGSEIHHGITVRSAAGGGVHRRFYRP-SGPRCDGESTAPPCTGWVEMMVPVFSRAAWR |
|
Parental | CAWHMIQNDLIYAWGLDFKLGYCARGDRRLNVGIVDSEYVLHRGIPTLGDGGGKAAPSTKAATDRLAVRQ |
| CAW.M.QNDL..AWGLD.KLGY...GDR.L.VG.VDSEYV.HRG.PTLG.GGG..A....A...R.AVR. |
Retrocopy | CAWGMVQNDLVHAWGLDYKLGYWPGGDRTLKVGVVDSEYVFHRGVPTLG-GGGGSA----APAFRAAVRR |
|
Parental | RSYTELQIFNRRWKAAAAEDVCWTDPYP |
| RSY.E.QIFNRRWK.A.AED..WTDPYP |
Retrocopy | RSYAEMQIFNRRWKQAVAEDASWTDPYP |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Oryza brachyantha was not studied using RNA-Seq expression data.
Oryza brachyantha was not studied using ChIP-Seq data.
Oryza brachyantha was not studied using EST data.
Oryza brachyantha was not studied using FANTOM5 data.
retro_obra_21 was not experimentally validated.
Retrocopy orthology:
Oryza brachyantha does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
2 parental genes, and
2 retrocopies.