>retro_ocun_1012
GGCACCAATGCCTTGGCATTCGAGAAAGAGAATGGCCCAGAACAGTTTCCCATCAACAAGCACTATTTTGAATTAGTCAA
TTTTGGGAATACCAACTACTATAATTCAGTTCTTCAAGAACTTTATTTCTGTTGTTCATTCCGGGAAGAAGTTCTAGCAT
ACAAGAGTCAGCTTAGAGAGGAGAGCTTTCTCAGGTACTTAGAGGACCTCGTCCATAGCATCACGACTCAAGAAAATGGT
AGGAGTTATCCCTTCAAAGTTCATAGCAATATTATGAAGGGGGGAAATGAGCTTTTTGACAACTACAAGTAACAAGATGC
CCATGAATTCTTAAATTGCCCACTAAATACAATTGCTGGTATTTTACAAGAAGAGAGAAAGCAGGATAAACAAAATGGTC
ACTTAATTGATGGAAATATTGACAGTGAAAATAACAACAGCACACCAGATCCAACAGAGGGTTAATGAGATTTTCAGGGA
ACATTAACTAATGAAACCAGATGTCTTACTCATATAAGCTAAGATGAAGATTTTTTAGAACTTTCTGTTGAGGTAGAACA
GAACACATTAATTACACGCTGCTTAAGGGGTTTTGGCAACACAGAAACCCTGTGCAGAAAATACATATAGTACTGTGAAG
AGTGTCACAGCAAGCAGGAAGCACACAAATGCATGAAAGTTAGAAAACTGCCCGTGATTCTAACTCTACACCTGAAGAGA
TTTAAATACATAGATCAAGTTCATCGATATGTAAAACTTTCTTATCAGGTAGTTTTTTCCTTTAGAACTTCATCTGTTTA
ACACATGAGGTTACGCAAACAATCTTGACAGGATATACGATCTTGTTGCTGTTATAGCTCACCCTGGAAGTGGTCCCAAT
CGAGGCCATTATGTTGCAATAGTCGAGTCATGATTTTTGGTTGATGATGACATTGTAGAAAAAAATAGATGTACAAGCTA
TTGAAGAATTCTATGGGTTGACATCAGATATCTCATAGAAC
ORF - retro_ocun_1012 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
65.41 % |
Parental protein coverage: |
80.81 % |
Number of stop codons detected: |
8 |
Number of frameshifts detected |
2 |
Retrocopy - Parental Gene Alignment:
Parental | GTNASALEKDIGPEQFPINEHYFGLVNFGNTCYCNSVLQALYFCRPFRENVLAYKAQQKKKENLLTCLAD |
| GTNA.A.EK..GPEQFPIN.HYF.LVNFGNT.Y.NSVLQ.LYFC..FRE.VLAYK..Q...E..L..L.D |
Retrocopy | GTNALAFEKENGPEQFPINKHYFELVNFGNTNYYNSVLQELYFCCSFREEVLAYKS-QLREESFLRYLED |
|
Parental | LFHSIATQKKKVGVIPPKKFISRLRK-ENDLFDNYMQQDAHEFLNYLLNTIADILQEEKKQEKQNGKLKN |
| L.HSI.TQ....G...P.K..S...K..N.LFDNY..QDAHEFLN..LNTIA.ILQEE.KQ.KQNG.L.. |
Retrocopy | LVHSITTQEN--GRSYPFKVHSNIMKGGNELFDNYK*QDAHEFLNCPLNTIAGILQEERKQDKQNGHLID |
|
Parental | GNMNEPAENNKAELTWVHEIFQGTLTNETRCLNCETVSSKDEDFLDLSVDVEQNTSITHCLRDFSNTETL |
| GN......N.....T.....FQGTLTNETRCL...T..S.DEDFL.LSV.VEQNT.IT.CLR.F.NTETL |
Retrocopy | GNIDSENNNSTPDPTEG**DFQGTLTNETRCL---THIS*DEDFLELSVEVEQNTLITRCLRGFGNTETL |
|
Parental | CSEQKYYCETCCSKQEAQKRMRVKKLPMILALHLKRFKYMEQLHRYTKLSYRVV-FPLELRLFNTSSDAV |
| C.....YCE.C.SKQEA.K.M.V.KLP.IL.LHLKRFKY..Q.HRY.KLSY.VV.FPLEL.LFNT...A. |
Retrocopy | CRKYI*YCEECHSKQEAHKCMKVRKLPVILTLHLKRFKYIDQVHRYVKLSYQVV>FPLELHLFNT*GYAN |
|
Parental | NLDRMYDLVAVVVHCGSGPNRGHYITIVKSHGFWLLFDDDIVE-KIDAQAIEEFYGLTSDISKN |
| NLDR.YDLVAV..H.GSGPNRGHY..IV.S....L..DD.IVE.KID.QAIEEFYGLTSDIS.N |
Retrocopy | NLDRIYDLVAVIAHPGSGPNRGHYVAIVES--*FLVDDD-IVE>KIDVQAIEEFYGLTSDIS*N |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
Library |
Retrocopy expression |
Parental gene expression |
SRP017611_brain |
0 .00 RPM |
182 .51 RPM |
SRP017611_kidney |
0 .00 RPM |
55 .95 RPM |
SRP017611_liver |
0 .00 RPM |
12 .18 RPM |
Oryctolagus cuniculus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_ocun_1012 retrocopy.
Oryctolagus cuniculus was not studied using FANTOM5 data.
retro_ocun_1012 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_ocun_1012 has 0 orthologous retrocopies within eutheria group .
Parental genes homology:
Parental genes homology involve
2 parental genes, and
2 retrocopies.