>retro_ocun_1085
GCTGTTGGAGCAAGAGCGTGGGCGAGCAGTCTGAATGCCAGAATGGATAACCGTGTTGCTACAGCATTTGTAATTGCTTG
TGTGCTTAGCTTCATTTCCACCATCTACATGGCAGCCTCAATTGGCACAGACTTTTGGTATGAGTATCGAAGTCCAGTTC
AAGAGAATTCAAGTGATTGGAATAAAAGCATCTGGGAAGACTTCATTAGTGATGAGGCAGATGAAAAGACTTACAACGAT
GCACTTTTCCGATACAACGGCACAATGGGATTGTGGAGACGGTGTATCACCATACCCAAAAACACACATTGGTACAGTCC
GCTAGAAAGGGCAGAGTCATTTGACGTGGTTACAAAATGCCTAAGTTTCACACTACATGAACAGTTCATGGAGAAAATTG
TTGATCCCGGAAACCACAATAGTGGAATTTATCTACTTCGGACCTATCTTTGGCGTTTGCCAGTTCCTCTTCCCTTTTGT
GAGTCTGGGTTTGATGTGCTTTGGGGATTTGACTGGACTTTGTGCCTGTATCTGTCGAAGCTTGTATCCCACCGTTGCCA
CGGGCATTCTCCATCTCCTTGCAGGTCTTTGTACACTGGGCTCAGTAAGTTGTTATGTTGCTGGAATTGAACTACTTCGT
CAGAAACCTGAGCTGCCTGAGAATGTGTCTGGTGAATTTGGATGGTCCTTCTGCCTGGCTTGCGTCTCAGCTCCCTTACA
GTTCATGGCTTCTGCCCTCTTCATCTGGGCTGCTCACACCAACCGGAAAGAGTACACCTTCATGAAGGCATATCGTGTGG
CG
ORF - retro_ocun_1085 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
91.42 % |
Parental protein coverage: |
96.73 % |
Number of stop codons detected: |
0 |
Number of frameshifts detected |
1 |
Retrocopy - Parental Gene Alignment:
Parental | SVSVASW-SSLNARMDNRFATAFVIACVLSLISTIYMAASIGTDFWYEYRSPVQENSSDWNKSIWEDFIS |
| .V....W.SSLNARMDNR.ATAFVIACVLS.ISTIYMAASIGTDFWYEYRSPVQENSSDWNKSIWEDFIS |
Retrocopy | AVGARAWASSLNARMDNRVATAFVIACVLSFISTIYMAASIGTDFWYEYRSPVQENSSDWNKSIWEDFIS |
|
Parental | DEADEKTYNDALFRYNGTMGLWRRCITVPKNTHWYSPPERTESFDVVTKCVSFTLNEQFMEKFVDPGNHN |
| DEADEKTYNDALFRYNGTMGLWRRCIT.PKNTHWYSP.ER.ESFDVVTKC.SFTL.EQFMEK.VDPGNHN |
Retrocopy | DEADEKTYNDALFRYNGTMGLWRRCITIPKNTHWYSPLERAESFDVVTKCLSFTLHEQFMEKIVDPGNHN |
|
Parental | SGIDLLRTYLWR-CQFLLPFVSLGLMCFGALIGLCACICRSLYPTIATGILHLLAGLCTLGSVSCYVAGI |
| SGI.LLRTYLWR.CQFL.PFVSLGLMCFG.L.GLCACICRSLYPT.ATGILHLLAGLCTLGSVSCYVAGI |
Retrocopy | SGIYLLRTYLWR>CQFLFPFVSLGLMCFGDLTGLCACICRSLYPTVATGILHLLAGLCTLGSVSCYVAGI |
|
Parental | ELLHQKLELPENVSGEFGWSFCLACVSAPLQFMASALFIWAAHTNRKEYTLMKAYRVA |
| ELL.QK.ELPENVSGEFGWSFCLACVSAPLQFMASALFIWAAHTNRKEYT.MKAYRVA |
Retrocopy | ELLRQKPELPENVSGEFGWSFCLACVSAPLQFMASALFIWAAHTNRKEYTFMKAYRVA |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
Library |
Retrocopy expression |
Parental gene expression |
SRP017611_brain |
0 .72 RPM |
48 .84 RPM |
SRP017611_kidney |
0 .30 RPM |
26 .45 RPM |
SRP017611_liver |
0 .15 RPM |
12 .10 RPM |
Oryctolagus cuniculus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_ocun_1085 retrocopy.
Oryctolagus cuniculus was not studied using FANTOM5 data.
retro_ocun_1085 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_ocun_1085 has 0 orthologous retrocopies within eutheria group .
Parental genes homology:
Parental genes homology involve
3 parental genes, and
3 retrocopies.