RetrogeneDB ID: | retro_ocun_1114 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | 2:113032634..113033392(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SGK1 | ||
Ensembl ID: | ENSOCUG00000014367 | ||
Aliases: | SGK1, SGK | ||
Description: | serum/glucocorticoid regulated kinase 1 (SGK1), mRNA [Source:RefSeq mRNA;Acc:NM_001082056] |
Percent Identity: | 82.06 % |
Parental protein coverage: | 60.32 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | RMRG-MVAILIAFMKQRRMGLNDFIQKIANNSYACKHTEVQSILKISQPQEPELMNANPSPPPSPSQQIN |
R..G.MVAILI.FMKQR.MGLNDFIQK.ANNS..CKH.EVQSILKISQPQEP.LMNANPS..PSPSQQIN | |
Retrocopy | RLQGAMVAILITFMKQR-MGLNDFIQKMANNSSMCKHPEVQSILKISQPQEPKLMNANPSSLPSPSQQIN |
Parental | LGPSSNPHAKPSDFHFLKVIGKGSFGKVLLARHKAEEAFYAVKVLQKKAILK-KKEEKHIMSERNVLLKN |
LGPSSNPHAKPSD...LKVIGKG.FGK.L.ARH.AEEAFYAVKVLQKKAIL..K.E..HIMSE.NVLL.N | |
Retrocopy | LGPSSNPHAKPSD-SLLKVIGKGNFGKILPARHEAEEAFYAVKVLQKKAILR<KEEK-HIMSEWNVLL-N |
Parental | VKHPFLVGLHFSFQTADKLYFVLDYINGGELFYHLQRERCFLEPRARFYAAEIASALGYLHSLNIVYRDL |
VKHPFLVGLHF..QTADKLYFVLDY.N.GELFYHLQRERCFLEP...FYAAEIASA.GYL...NI.YRDL | |
Retrocopy | VKHPFLVGLHFC-QTADKLYFVLDYVNSGELFYHLQRERCFLEPQVLFYAAEIASAWGYL---NIIYRDL |
Parental | KPENILLDSQGHIVLTDFGLCKENIEHNGTTSTFCGTPEYLAPEVLHKQPYD |
K.EN.LLD.QGHIVL.DFGLCK.N.EHNG..STFCGTPEYLAPEVLHK.PYD | |
Retrocopy | KLENTLLDLQGHIVLADFGLCKGNTEHNGMMSTFCGTPEYLAPEVLHKVPYD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 73 .62 RPM |
SRP017611_kidney | 0 .00 RPM | 113 .92 RPM |
SRP017611_liver | 0 .00 RPM | 102 .36 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000006626 | 1 retrocopy | |
Erinaceus europaeus | ENSEEUG00000008758 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000012698 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000007886 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000006428 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000014367 | 1 retrocopy |
retro_ocun_1114 ,
|
Tursiops truncatus | ENSTTRG00000009699 | 1 retrocopy |