RetrogeneDB ID: | retro_ocun_1189 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | 3:42949684..42950116(-) | ||
Located in intron of: | ENSOCUG00000010098 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSOCUG00000010245 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 99.31 % |
Parental protein coverage: | 97.96 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | VQKRLQKELLALQNDPPPGMTLNEKSVQNSITQWIVDMEGAPGTLYEGEKFQLLFKFSSRYPFDSPQVMF |
.QKRLQKELLALQNDPPPGMTLNEKSVQNSITQWIVDMEGAPGTLYEGEKFQLLFKFSSRYPFDSPQVMF | |
Retrocopy | MQKRLQKELLALQNDPPPGMTLNEKSVQNSITQWIVDMEGAPGTLYEGEKFQLLFKFSSRYPFDSPQVMF |
Parental | TGENIPVHPHVYSNGHICLSILTEDWSPALSVQSVCLSIISMLSSCKEKRRPPDNSFYVRTCNKNPKKTK |
TGENIPVHPHVYSNGHICLSILTEDWSPALSVQSVCLSIISMLSSCKEKRRPPDNSFYVRTCNKNPKKTK | |
Retrocopy | TGENIPVHPHVYSNGHICLSILTEDWSPALSVQSVCLSIISMLSSCKEKRRPPDNSFYVRTCNKNPKKTK |
Parental | WWYH |
WWYH | |
Retrocopy | WWYH |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 4 .58 RPM | 1 .38 RPM |
SRP017611_kidney | 4 .26 RPM | 1 .32 RPM |
SRP017611_liver | 1 .62 RPM | 0 .39 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Mus musculus | ENSMUSG00000025939 | 1 retrocopy | |
Ornithorhynchus anatinus | ENSOANG00000008597 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000010245 | 1 retrocopy |
retro_ocun_1189 ,
|
Oryctolagus cuniculus | ENSOCUG00000012176 | 3 retrocopies | |
Otolemur garnettii | ENSOGAG00000027181 | 2 retrocopies | |
Procavia capensis | ENSPCAG00000012043 | 2 retrocopies |