RetrogeneDB ID: | retro_ocun_119 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | X:86635609..86636152(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSOCUG00000005663 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSOCUG00000029741 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 89.44 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MNTVLSRANSLFAFSLSVMAALTFGCFITTAFKDRSVPVRLHVSRIMLKNVEDFTGPRERSDLGFITFDI |
MNT.LSRANSLFAFSLSVMAA.T.GCF.TTAFKDR.VPV.L.VSRIMLKNVEDFTGPR.RSDLGFITF.I | |
Retrocopy | MNTLLSRANSLFAFSLSVMAAVTLGCFVTTAFKDRCVPVQLQVSRIMLKNVEDFTGPRQRSDLGFITFHI |
Parental | TADLENIFDWNVKQLFLYLSAEYSTKNNALNQVVLWDKIVLRGDNPKLLLKDMKTKYFFFDDGNGLKGNR |
TADLE..FDWNVKQLFLYLSAEYSTKNNA.NQVVLWDKIVLRGDNPKL..KD.K.KYFFFDDGNGLKGNR | |
Retrocopy | TADLEKTFDWNVKQLFLYLSAEYSTKNNAVNQVVLWDKIVLRGDNPKLRVKDVKAKYFFFDDGNGLKGNR |
Parental | NVTLTLSWNVVPNAGILPLVTGSGHVSVPFPDTYEITKSY |
NVTLTLSWNVVP.AGILPLVTGSGHVSVPFPD.YEI.KSY | |
Retrocopy | NVTLTLSWNVVPIAGILPLVTGSGHVSVPFPDAYEIMKSY |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 1 .66 RPM | 11 .76 RPM |
SRP017611_kidney | 0 .00 RPM | 22 .91 RPM |
SRP017611_liver | 0 .00 RPM | 20 .27 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Microcebus murinus | ENSMICG00000001987 | 2 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000029741 | 1 retrocopy |
retro_ocun_119 ,
|
Otolemur garnettii | ENSOGAG00000003825 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000015218 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000015012 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000013678 | 1 retrocopy |