>retro_ocun_1190
ATGAAGTCGGGAGGCGGAAGTCAGTGGCGGGGTTGCTTGCTTGCACTTCGCTTCCTCTTCCTATTTTTCTGGGGCGTCCC
TGGGGCCAGGGCATTGGACAATGGCTTGGCGAGGACGCCTACCATGGGCTGGCTACACTGGGAGCGCTTCCTATGTAATC
TTGACTGCCAGGCAGAGCCGGAATCCTGCATCAGTGAGCATCTCTTCATGCAGATGGCAGAGCTCATGGTCTCAGATGGC
TGGAAGGATGCCGGTTATGAATGCCTCTGCATTGACGACTGTTGGATGGCTCCCGAAAGAGATCCAAAAGGCAGGCTTCA
GGCGGACCCTCAGCGCTTTCCTGGGGGGATCCGCCGCCTTGCTGATTATGTCCACAGCAAAGGACTAAAGCTAGGGATTT
ATGCAGATGTTGGAAATAAAACCTGTGCAGGGTACCCTGGGAGTTTCGGACACTATGACATTGATGCCCAGACCTTTGCT
GACTGGGGAGTAGATCTGCTAAAATTTGATGGTTGTCACTGTGACAGTGTGAAGCATTTGATTGAAGGTTATCAGTACAT
GTCCTTGGCTCTGAACAGGACTGGCAGAAGCATTGTATACTCCTGTGAGTGGCCTCTTTATATGTGGCCCTTTCATAAGC
CCAATTACACAAAAATTCGGACATACTGCAATCACTGGAGAAATTCTGCTGACATTTATGATTCCTGGGAAAGTATAAAG
AGTATCTTGGCCTGGACATCTTCTAACCAGGAGAAAATTGTTGATGTTGCTGGACCAGGGGGCTGGAATAACCCAGATAT
GTTAGTGATTGGCAACTTTGGCCTCAGCTGGAATCAACAAGTAACTCAGATGGCTCTCTGGGCTATCATGGCAGCTCCTT
TAATCATGTCTAATGACCTCAGACACATCAGCCCTCAAGCCAAAAGTTTACTTCAGAATAAAGATGTGATTGCCATCAAC
CAGGACCCCTTGGGCAAGCAGGGGTACCTGCTTAGAAAGGAAAGCAGCATTGAGGTGTGGGAATGACCCCTCTCAAACTT
ATCCTGGGCTGTAGCCGTTATGAACCTGCAGGAAATTGGTGGACCCTGTTATTATACCATCGCAGTTGCTTCCCTTGGAA
GATGAATAGCATGTAATCCTGCCTGCCTCATCACACAGCTCCTCCCTGAGAAAAGGAAACTTGGGTTCTATACATGGACT
TCAAGCATAAAAACCCGAGTAAATCCCACAGGCACCGTTTTGCTCCAGCTAGGTGGGACAAGTAAGACTACATCA
ORF - retro_ocun_1190 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
97.65 % |
Parental protein coverage: |
98.84 % |
Number of stop codons detected: |
2 |
Number of frameshifts detected |
0 |
Retrocopy - Parental Gene Alignment:
Parental | MKSGRGRQWRGCLLALRFLFLFFWGVPGARALDNGLARTPTMGWLHWERFLCNLDCQAEPESCISEHLFM |
| MKSG.G.QWRGCLLALRFLFLFFWGVPGARALDNGLARTPTMGWLHWERFLCNLDCQAEPESCISEHLFM |
Retrocopy | MKSGGGSQWRGCLLALRFLFLFFWGVPGARALDNGLARTPTMGWLHWERFLCNLDCQAEPESCISEHLFM |
|
Parental | QMAELMVSDGWKDAGYEYLCIDDCWMAPERDPEGRLQADPQRFPGGIRRLADYVHSKGLKLGIYADVGNK |
| QMAELMVSDGWKDAGYE.LCIDDCWMAPERDP.GRLQADPQRFPGGIRRLADYVHSKGLKLGIYADVGNK |
Retrocopy | QMAELMVSDGWKDAGYECLCIDDCWMAPERDPKGRLQADPQRFPGGIRRLADYVHSKGLKLGIYADVGNK |
|
Parental | TCAGYPGSFGHYDIDAQTFADWGVDLLKFDGCHCDSVKHLIEGYQYMSLALNRTGRSIVYSCEWPLYMWP |
| TCAGYPGSFGHYDIDAQTFADWGVDLLKFDGCHCDSVKHLIEGYQYMSLALNRTGRSIVYSCEWPLYMWP |
Retrocopy | TCAGYPGSFGHYDIDAQTFADWGVDLLKFDGCHCDSVKHLIEGYQYMSLALNRTGRSIVYSCEWPLYMWP |
|
Parental | FHKPNYTKIRTYCNHWRNSADIYDSWESIKSILAWTSSNQEKIVDVAGPGGWNDPDMLVIGNFGLSWNQQ |
| FHKPNYTKIRTYCNHWRNSADIYDSWESIKSILAWTSSNQEKIVDVAGPGGWN.PDMLVIGNFGLSWNQQ |
Retrocopy | FHKPNYTKIRTYCNHWRNSADIYDSWESIKSILAWTSSNQEKIVDVAGPGGWNNPDMLVIGNFGLSWNQQ |
|
Parental | VTQMALWAIMAAPLIMSNDLRHISPQAKSLLQNKDVIAINQDPLGKQGYLLRKESSIEVWERPLSNLSWA |
| VTQMALWAIMAAPLIMSNDLRHISPQAKSLLQNKDVIAINQDPLGKQGYLLRKESSIEVWE.PLSNLSWA |
Retrocopy | VTQMALWAIMAAPLIMSNDLRHISPQAKSLLQNKDVIAINQDPLGKQGYLLRKESSIEVWE*PLSNLSWA |
|
Parental | VAVMNLQEIGGPCYYTIAVASLGRGIACNPACLITQLLPEKRKLGFYTWTSSIKTRVNPTGTVLLQLGGT |
| VAVMNLQEIGGPCYYTIAVASLGR.IACNPACLITQLLPEKRKLGFYTWTSSIKTRVNPTGTVLLQLGGT |
Retrocopy | VAVMNLQEIGGPCYYTIAVASLGR*IACNPACLITQLLPEKRKLGFYTWTSSIKTRVNPTGTVLLQLGGT |
|
Parental | NKSMS |
| .K..S |
Retrocopy | SKTTS |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
Library |
Retrocopy expression |
Parental gene expression |
SRP017611_brain |
0 .11 RPM |
2 .15 RPM |
SRP017611_kidney |
1 .01 RPM |
12 .77 RPM |
SRP017611_liver |
0 .08 RPM |
2 .31 RPM |
Oryctolagus cuniculus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_ocun_1190 retrocopy.
Oryctolagus cuniculus was not studied using FANTOM5 data.
retro_ocun_1190 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_ocun_1190 has 0 orthologous retrocopies within eutheria group .
Parental genes homology:
Parental genes homology involve
4 parental genes, and
4 retrocopies.