RetrogeneDB ID: | retro_ocun_1427 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | 8:88333548..88334623(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | KAT7 | ||
Ensembl ID: | ENSOCUG00000000668 | ||
Aliases: | None | ||
Description: | K(lysine) acetyltransferase 7 [Source:HGNC Symbol;Acc:17016] |
Percent Identity: | 78.51 % |
Parental protein coverage: | 59.08 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 2 |
Parental | QAPTERQLRYKEKVAELRKKRNSGLSKEQKEKYMEHRQTYGNTREPLLENLTSEYDLDLFRRAQARASED |
QAPT.R.L.YKEKV..L...R.SG.SKEQKEKYMEHR.TYG.T.EPLLENLTSEYDL.LF.RAQAR.SED | |
Retrocopy | QAPTKRHL*YKEKV--LNSRRDSGPSKEQKEKYMEHRPTYGDTQEPLLENLTSEYDLNLFQRAQARTSED |
Parental | LEKLRLQGQI-TEGSNMIKTIAFGRYEL-DTWYHSPYPEEYARLGRLYMCEFCLKYMKSQTILRRHMAKC |
LEKLRLQGQI...G....K........L.D.W.HSPYPEE...LGRLYMCEFCLKYMKSQT.LR.H.AK. | |
Retrocopy | LEKLRLQGQI<WRGAT*LKQLLLAAMNL<DIWCHSPYPEE*VWLGRLYMCEFCLKYMKSQTTLRGHTAKY |
Parental | VWKHPPGDEIYRKGSISVFEVDGKKNKIYCQNLCLLAKLFLDHKTLYYDVEPFLFYVMTEADNTGCHLIG |
V.KHPPG.E.Y.KGSISV..VDGKKNKIYCQ.LCLLAKLFLDHKTLYY..EPFL.YVMTEADNTGCHLIG | |
Retrocopy | VCKHPPGGEMYHKGSISVSKVDGKKNKIYCQSLCLLAKLFLDHKTLYYNMEPFLVYVMTEADNTGCHLIG |
Parental | YFSKEKNSFLNYNVSCILTMPQYMRQGYGKMLIDFSYLLSKVEEKVGSPERPLSDLGLISYRSYWKEVLL |
YFSKEKNSFLNYNVSC.LTMPQYM.Q..GKML.DFSYLL.KVE.KVGSP.....DLGLI.YRSY.KEVLL | |
Retrocopy | YFSKEKNSFLNYNVSCVLTMPQYMKQRRGKMLGDFSYLLCKVEDKVGSPKYAILDLGLICYRSYQKEVLL |
Parental | RYLHNFQGKEISIKEISQETAVNPVDIVSTLQALQMLKYWKGKHLVLKRQDLIDEWIAKEAKRSNSNKTM |
.YLHNFQGKE.SI.EI.QE.A.N.VDIV.TLQALQ..KYWK.KHLVLKRQDLIDEWIAKEAK.SNSNKTM | |
Retrocopy | CYLHNFQGKEVSIREICQEMAMNSVDIVNTLQALQLFKYWKRKHLVLKRQDLIDEWIAKEAKWSNSNKTM |
Parental | DPSCLKWTPPKGT |
DPSCL.WTPPKGT | |
Retrocopy | DPSCLQWTPPKGT |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 46 .91 RPM |
SRP017611_kidney | 0 .00 RPM | 32 .54 RPM |
SRP017611_liver | 0 .00 RPM | 13 .87 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000016955 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000007037 | 1 retrocopy | |
Homo sapiens | ENSG00000136504 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000007469 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000003201 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000000668 | 1 retrocopy |
retro_ocun_1427 ,
|
Pongo abelii | ENSPPYG00000008925 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000009383 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000000472 | 2 retrocopies |