>retro_ocun_1659
TGGAGTGAAAGTGGCAAAACAGACAGGATGTCTGCTAGCAGCCAATCATTAAAGAAATATTAAAAAATTTTCCAAAATAG
AGATGAGATCCTCTGAAAGAAAATACTCCAGTACATGGTGTTGGACTAGGAAGATAGACCTGGGAATATCAATGCTAGGT
TTTGCTTCTCAAGGAATTAATATAATCTTTTTCTGCTTTTTCCCTCACCATTATACTCAATGGATGCTCTGAAATTAATA
AATATATACTATATACTGGGTCCAACAGATTAACAACATATCAGCTGATCGGATTAGACTTACCTTTTTTCTCTGATCTT
GACTCCCATCATCTTCCCCTTGTTTGTAACTTTTCTTTGAATGTAACAGCTTTTCTGGAGATTTATTCAAAATTCAATAC
CTGGAACTATATTGCTATGTGCTTCTTCATAGATACTGCTCACCATGTAATGGATTACATTGATATGAGATGGAAAATAT
TTAAAACAGCTGGAATTTGGATCAATCCAGGGCATCTTCTGCATTACTCTGAAAATGGTAGCAAATGAACTTTTCATAGA
ATTGAGCTACAAGGATACAAATATTGTCATTCTGCAATATGAATTCCAAGTAGAGATGAAAAAACAATCTATC
ORF - retro_ocun_1659 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
59.28 % |
Parental protein coverage: |
53.37 % |
Number of stop codons detected: |
5 |
Number of frameshifts detected |
7 |
Retrocopy - Parental Gene Alignment:
Parental | WSETGKAER-DACYQPIIKEILKNFPKERWDPSKVTILVPGAGLGRLAWE-IAMLGYACQG-NEWSFFML |
| WSE.GK..R.D.C.QPIIKEILKNFPK.R.DP.K....V.G.GLGR..WE.I.MLG.A.QG.N....F.L |
Retrocopy | WSESGKTDR<DVC*QPIIKEILKNFPK*R*DPLKENTPVHGVGLGR*TWE<ISMLGFASQG<N*YNLFLL |
|
Parental | FSS-NFVLNRCSEINKYRLYP-WIHQFSNNRRSADQIRPIFF-PDVDPHSLPPGSNFSMTAGDFQEIYSE |
| F.S....LN.CSEINKY.LY..W..Q..N...SAD.IR..FF..D.D.H.LP...NFS.....F.EIYS. |
Retrocopy | FPS<TIILNGCSEINKYILYT<WVQQINNI--SADRIRLTFF>SDLDSHHLPLVCNFSLNVTAFLEIYSK |
|
Parental | CNTWDCIATCFFIDTAHNVIDYIDTIWKILKPGGIWINLGPLLYHFEN-LANELSIELSYEDIKNVVLQY |
| .NTW..IA.CFFIDTAH.V.DYID..WKI.K..GIWIN.G.LL...EN..ANEL.IELSY.D...V.LQY |
Retrocopy | FNTWNYIAMCFFIDTAHHVMDYIDMRWKIFKTAGIWINPGHLLHYSEN>VANELFIELSYKDTNIVILQY |
|
Parental | GFQVEVEKESV |
| .FQVE..K.S. |
Retrocopy | EFQVEMKKQSI |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
Library |
Retrocopy expression |
Parental gene expression |
SRP017611_brain |
0 .00 RPM |
9 .49 RPM |
SRP017611_kidney |
0 .10 RPM |
14 .29 RPM |
SRP017611_liver |
0 .00 RPM |
5 .32 RPM |
Oryctolagus cuniculus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_ocun_1659 retrocopy.
Oryctolagus cuniculus was not studied using FANTOM5 data.
retro_ocun_1659 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_ocun_1659 has 0 orthologous retrocopies within eutheria group .
Parental genes homology:
Parental genes homology involve
3 parental genes, and
11 retrocopies.