RetrogeneDB ID: | retro_ocun_1678 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | GL018760:435143..435571(-) | ||
Located in intron of: | ENSOCUG00000024710 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | FAM210B | ||
Ensembl ID: | ENSOCUG00000017897 | ||
Aliases: | None | ||
Description: | family with sequence similarity 210, member B [Source:HGNC Symbol;Acc:16102] |
Percent Identity: | 92.36 % |
Parental protein coverage: | 73.33 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | LLRSARGDCRGR-QDPSRVTEVTGSAVGSTGGSRQSKAQQLRKIFQEYGAVGVSLHIGISLISLGLFYTV |
LLRSARG.CRGR.QDP.RVT.V.GSAVGSTGGS.QSKAQQLRKIFQ.YGAVGVSLH.GISLISLGLFYTV | |
Retrocopy | LLRSARGHCRGR<QDPRRVTAVPGSAVGSTGGSKQSKAQQLRKIFQQYGAVGVSLHVGISLISLGLFYTV |
Parental | VSSGVDMSAILLKLGFKESLVQSKMAAGTSTFVVAYAIHKLFAPVRISITLVSVPFIVRYFRKVGFFKPP |
VSSGVDMSAILLKLGFKESLVQSKMAAGT.TFVVAYA.HKLFA.VRISITLVSVPFIVRYFRKVGFFKPP | |
Retrocopy | VSSGVDMSAILLKLGFKESLVQSKMAAGTRTFVVAYAVHKLFASVRISITLVSVPFIVRYFRKVGFFKPP |
Parental | AAKP |
AAKP | |
Retrocopy | AAKP |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 19 .32 RPM |
SRP017611_kidney | 0 .10 RPM | 18 .45 RPM |
SRP017611_liver | 0 .00 RPM | 22 .51 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Cavia porcellus | ENSCPOG00000006630 | 1 retrocopy | |
Homo sapiens | ENSG00000124098 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000007028 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000017897 | 1 retrocopy |
retro_ocun_1678 ,
|
Pongo abelii | ENSPPYG00000011147 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000013645 | 1 retrocopy |