RetrogeneDB ID: | retro_ocun_1883 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | X:35854747..35855319(+) | ||
Located in intron of: | ENSOCUG00000011608 | ||
Retrocopyinformation | Ensembl ID: | ENSOCUG00000004911 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CBR4 | ||
Ensembl ID: | ENSOCUG00000006446 | ||
Aliases: | None | ||
Description: | carbonyl reductase 4 [Source:HGNC Symbol;Acc:25891] |
Percent Identity: | 79.49 % |
Parental protein coverage: | 81.01 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | LGG-DHLALSCDVAKEHDVQHTFEEMEKHLGQVNFLVNAAGINRDGLLVRTKTEDLVSQLHTNLLGSMLT |
LGG.DHLALSCDVAKEHDVQ.TFEEMEK.LGQVNFLVNAA.I..D.L..RTKTEDLVSQL.TNLL.SMLT | |
Retrocopy | LGG*DHLALSCDVAKEHDVQNTFEEMEKCLGQVNFLVNAADIIWDSL--RTKTEDLVSQLYTNLLVSMLT |
Parental | CRAAMRTMIQQQGGSIVNVGSIIGLKGNSGQSVYSASKGGLVG-FSRALAKEVARKKI-RVNVVAPGFVR |
CRAA.RT.IQQQ.GS.VNVGSIIGLKGNSGQSVYSASKGGLVG.F...L.K.....K..RVNV.APGF.. | |
Retrocopy | CRAAVRTIIQQQAGSVVNVGSIIGLKGNSGQSVYSASKGGLVG>FHMLLPKR*QERKF>RVNVIAPGFIC |
Parental | TDMTKDLKEEHLKKNIPLGRFGETIEVAHAIVFLLESPYITGHVLVVDGGLQLAI |
TD.TKDLKE.HLKKNIPLG.FGET.EVAH.IVFLLESPYITGH.LVVDG.LQ... | |
Retrocopy | TDTTKDLKE-HLKKNIPLGKFGETVEVAHVIVFLLESPYITGHGLVVDGALQVIV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 1 .99 RPM |
SRP017611_kidney | 0 .00 RPM | 9 .02 RPM |
SRP017611_liver | 0 .00 RPM | 2 .00 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000013400 | 1 retrocopy | |
Canis familiaris | ENSCAFG00000007520 | 1 retrocopy | |
Felis catus | ENSFCAG00000030280 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000006446 | 1 retrocopy |
retro_ocun_1883 ,
|
Tursiops truncatus | ENSTTRG00000000258 | 1 retrocopy |