>retro_ocun_1903
ATGTCGCGCGGCGGAACCGACTCCGAGCAGCGCCAGCAGGCGTCAGAGGCAGACGCCACCAAAACAGCCTTCCTGGCAAG
CGAGCATCAGCATATCCGCTACAACCCGCTGCAGGATGAGTGGGTGCTGGTGTCAGCTCACCGCATGAAGCGGCCCTGGC
AGGGGCAAGTGGAGCCCGAGCCTCTGAAGACAGTGCCCCGCCACGACCCCCTCAACCCTCTGTGTCCCGGGGCCACCCGG
GCCAATGGAGAGGTGAATCCTAACTATGATGGCACCTTCCTGTTCGACAACGACTTCCCAGCTCTGCAGCCTGATGCCCC
TAATCCAGGACCCAGCGATCACCCGCTTTTCCAAGTGCAGGCTGCCCGAGGAGTTTGTAAGGTCATGTGCTTCCACCCCT
GGTCGGATGTGACGCTGCCACTCAATGTCAGTCCCTGAGATCCGGGCTGTCGTCGATGCATGGGCCTCAGTCACAGAGGA
TCTGGGTGCTCAGTACCCTTGGGTGCAGATCTTTGAAAACAAAGGAGCCATGATGGGCTGTTCCAATCCCCACCCCCATT
GCCAGGTGTGGGCCAGCAGCTTCCTGCCAGATATTGCCCAGCGCGAGGAGAGATCTCAGCGGGCCTATCACAGTCAACAC
GGAGAGCCTCTGCTGATGGAGTATGGCCGCCAGGAGCTGCTCCGGAAGGACCATCTGGTCCTAACCAGCGAGCACTGGTT
GGTGCTGGTCCCCTTCTGGGCAGTGTGGACCTTGCAGACACTGCTGCTGCCCCGTCGCCATGTGTGGTGGCTGCCTGAGC
TGACCCCCACTGAGCGCGATGATCTGGCCTCCATCATGAAGAAGCTCTTGACCAAGTACGACAACCTGTTTGAGACTTCC
CTTCCCTACTCCATGGGCTGGCATGGAGCTCCCACAGGGTCAGAGGCTGGGGCCACCTGGGACCACTGGCAGCTGCACGC
TCACTACTACCCTCCACTCCTCCGCTCTGCCACTCACCGCAAATTCATGGTTGGCTATGAAATGCTTACTCAGGCTCAGA
GGGACCTCACTCCTGAGCAGGCTACAGAGAGACTAAGGGCACTTCCTGAGGTTCATTACCGCCTGAGGCAGAAGGACAAG
GAGACTGCGGCCATC
ORF - retro_ocun_1903 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
96.04 % |
Parental protein coverage: |
99.74 % |
Number of stop codons detected: |
0 |
Number of frameshifts detected |
1 |
Retrocopy - Parental Gene Alignment:
Parental | MSRGGTDSEQRQQASEADATKTAFRASEHQHIRYNPLQDEWVLVSAHRMKRPWQGQVEPEPLKTVPRHDP |
| MSRGGTDSEQRQQASEADATKTAF.ASEHQHIRYNPLQDEWVLVSAHRMKRPWQGQVEPEPLKTVPRHDP |
Retrocopy | MSRGGTDSEQRQQASEADATKTAFLASEHQHIRYNPLQDEWVLVSAHRMKRPWQGQVEPEPLKTVPRHDP |
|
Parental | LNPLCPGATRANGEVNPNYDGTFLFDNDFPALQPDAPNPGPSDHPLFQAQAARGVCKVMCFHPWSDVTLP |
| LNPLCPGATRANGEVNPNYDGTFLFDNDFPALQPDAPNPGPSDHPLFQ.QAARGVCKVMCFHPWSDVTLP |
Retrocopy | LNPLCPGATRANGEVNPNYDGTFLFDNDFPALQPDAPNPGPSDHPLFQVQAARGVCKVMCFHPWSDVTLP |
|
Parental | L-MSVPEIRAVVDAWASVTEDLGTQYPWVQIFENKGAMMGCSNPHPHCQVWASSFLPDIAQREERSQRAY |
| L.MSVPEIRAVVDAWASVTEDLG.QYPWVQIFENKGAMMGCSNPHPHCQVWASSFLPDIAQREERSQRAY |
Retrocopy | L>MSVPEIRAVVDAWASVTEDLGAQYPWVQIFENKGAMMGCSNPHPHCQVWASSFLPDIAQREERSQRAY |
|
Parental | HSQHGEPLLMEYGRQELLRKDRLVLTSEHWLVLVPFWAVWPFQTLLLPRRHVRRLPELTPTERDDLASIM |
| HSQHGEPLLMEYGRQELLRKD.LVLTSEHWLVLVPFWAVW..QTLLLPRRHV..LPELTPTERDDLASIM |
Retrocopy | HSQHGEPLLMEYGRQELLRKDHLVLTSEHWLVLVPFWAVWTLQTLLLPRRHVWWLPELTPTERDDLASIM |
|
Parental | KKLLTKYDNLFETSFPYSMGWHGAPTGSEAGAAWDHWQLHAHYYPPLLRSATVRKFMVGYEMLAQAQRDL |
| KKLLTKYDNLFETS.PYSMGWHGAPTGSEAGA.WDHWQLHAHYYPPLLRSAT.RKFMVGYEML.QAQRDL |
Retrocopy | KKLLTKYDNLFETSLPYSMGWHGAPTGSEAGATWDHWQLHAHYYPPLLRSATHRKFMVGYEMLTQAQRDL |
|
Parental | TPEQAAERLRALPEVHYRLRQKDKETAAV |
| TPEQA.ERLRALPEVHYRLRQKDKETAA. |
Retrocopy | TPEQATERLRALPEVHYRLRQKDKETAAI |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
Library |
Retrocopy expression |
Parental gene expression |
SRP017611_brain |
0 .00 RPM |
17 .99 RPM |
SRP017611_kidney |
0 .10 RPM |
23 .41 RPM |
SRP017611_liver |
0 .00 RPM |
15 .65 RPM |
Oryctolagus cuniculus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_ocun_1903 retrocopy.
Oryctolagus cuniculus was not studied using FANTOM5 data.
retro_ocun_1903 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_ocun_1903 has 0 orthologous retrocopies within eutheria group .
Parental genes homology:
Parental genes homology involve
1 parental gene, and
1 retrocopy.