>retro_ocun_1908
TACCAGTGCCTCCCACTGGAGTACCTGCAGATCCCACCGGTCAGCTGCACCTGAAGTACCACCTGTGTCCTCACTGTCAC
AGCCGTGCAGTTGGAGCTGATCACACCTTTTAAGTTGTACTTCAATTCTGAGTTAATTTTTCAACATTTTCAAATATGGA
GGTTAATCACCAATTTTTAATTCTTTGGGTCCATTGAATTCAACTTTTTATTTAACATGATTTTTCTATATTATTACTGT
TAAATGCTAGAAGGCAGCTCATTCCGAGGCCAGACAGCAGACTTTGTATTTATGTTCTTTTTTTGGTAGATTTTTAATGA
CTCTTTTTGCTTTCTTTATGAGCTTAGTTTTCCTGGGCCAGGCCTTCAGATAATGCTGGTCTACGCTGGAGCCAAAGGAA
CCCATACGTCCACATGAACCTCTTTCACCTTCTCAACTTTAAGGTCCCCTTTTTGCCCTGAGGAAAACCTGCTTATGAGG
TTTTCCTTGTTGGTGGGGAACTCGATTATTGTGAACCTCTTGGGTATTGCTGATGGACACATATTTTTTCTTGGAAGATG
TATTCCCCAATCAGCGTGATGGTATAAGAATCCTGAAAACATTTATTTTGAAGGCTATTCTTGATACCCCAGATGAAGAT
CCAAATTACAATCCCCTACTTGAAGAGCATCCAGGT
ORF - retro_ocun_1908 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
74.14 % |
Parental protein coverage: |
94.14 % |
Number of stop codons detected: |
3 |
Number of frameshifts detected |
5 |
Retrocopy - Parental Gene Alignment:
Parental | YQSLRLEYLQIPPVSRAYTTACVLTTAAVQLELITPFQLYFNPELIFKHFQIWRLITNFLFFGPVGFNFL |
| YQ.L.LEYLQIPPVS....T.CVLT..AVQLELITPF.LYFN.ELIF.HFQIWRLITNF.FFG...FNFL |
Retrocopy | YQCLPLEYLQIPPVSCT*STTCVLTVTAVQLELITPFKLYFNSELIFQHFQIWRLITNF*FFGSIEFNFL |
|
Parental | FNMIFLYRYCRMLEEGSFRGRTADFVFMFLF-GGFLMTLFGLFVSLVFLGQAFT-IMLVYV-WSRRNPYV |
| FNMIFLY.YC.MLE..SFRG.TADFVFMF.F.G.FLMTLF..F.SLVFLGQAF..IMLVY..WS.RNPYV |
Retrocopy | FNMIFLYYYC*MLEGSSFRGQTADFVFMFFF>GRFLMTLFAFFMSLVFLGQAFR<IMLVYA<WSQRNPYV |
|
Parental | RMNFFGLLNFQ-APFLPW--VLMGFSLLLGNSIIVDLLGIAVGHIYFFLEDVFP-NQPGGIRILKTPSIL |
| .MN.F.LLNF...PF.P....LM.FSLL.GNSIIV.LLGIA.GHI.FFL....P.NQ..GIRILKT..IL |
Retrocopy | HMNLFHLLNFK>SPFCPEENLLMRFSLLVGNSIIVNLLGIADGHI-FFLGRCIP>NQRDGIRILKT-FIL |
|
Parental | KAIFDTPDEDPNYNPLPEERPG |
| KAI.DTPDEDPNYNPL.EE.PG |
Retrocopy | KAILDTPDEDPNYNPLLEEHPG |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
Library |
Retrocopy expression |
Parental gene expression |
SRP017611_brain |
0 .00 RPM |
26 .71 RPM |
SRP017611_kidney |
0 .00 RPM |
37 .60 RPM |
SRP017611_liver |
0 .00 RPM |
29 .67 RPM |
Oryctolagus cuniculus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_ocun_1908 retrocopy.
Oryctolagus cuniculus was not studied using FANTOM5 data.
retro_ocun_1908 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_ocun_1908 has 0 orthologous retrocopies within eutheria group .
Parental genes homology:
Parental genes homology involve
4 parental genes, and
10 retrocopies.