RetrogeneDB ID: | retro_ocun_270 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | 1:8841739..8841980(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MGST3 | ||
Ensembl ID: | ENSOCUG00000010376 | ||
Aliases: | None | ||
Description: | microsomal glutathione S-transferase 3 (MGST3), mRNA [Source:RefSeq mRNA;Acc:NM_001082138] |
Percent Identity: | 69.41 % |
Parental protein coverage: | 52.63 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 4 |
Parental | IQRAHQNTLEVY-PPFL-FFLAVGGVYH-PRIV-SGLGWVWIVGRVLYA-YGYYTGDPSKRYRGAVSSLA |
.Q.AHQN.LEVY.P..L.FFL.V.GVYH.P..V.SG.GWVW.V..VLY...GYY.GD.SK.Y.GAVSSLA | |
Retrocopy | LQSAHQNMLEVY<PSLLVFFLVVEGVYH<PWVV<SGFGWVWMVRWVLYT>HGYYLGDLSKCYGGAVSSLA |
Parental | LFGLMGTTVCSAFQH |
L..LMGTTVCSAFQH | |
Retrocopy | LVLLMGTTVCSAFQH |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 87 .69 RPM |
SRP017611_kidney | 0 .00 RPM | 154 .97 RPM |
SRP017611_liver | 0 .00 RPM | 91 .10 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000006658 | 1 retrocopy | |
Canis familiaris | ENSCAFG00000013353 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000012723 | 2 retrocopies | |
Echinops telfairi | ENSETEG00000003507 | 3 retrocopies | |
Mustela putorius furo | ENSMPUG00000003817 | 1 retrocopy | |
Mus musculus | ENSMUSG00000026688 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000010376 | 1 retrocopy |
retro_ocun_270 ,
|
Procavia capensis | ENSPCAG00000015774 | 2 retrocopies | |
Rattus norvegicus | ENSRNOG00000004245 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000005299 | 2 retrocopies |