>retro_ocun_340
TCAGAATATTAAGAGGCTCAGGAGGATGAACTGTTGGCCCTGGAGAGCATTTATGACAGAAGATGAATTGATAAAAGCCA
AGTCTGTCCAAAGCAGAGAAACCAGGATTATTTGGATTTGCCACAAAATTTCAAGATATTTGTGAGCAGCACTTCAGTGA
GTGTCTCCAGAATGGTGGCTCTCAATCCACCGTTGACTTTCTGCCTCACTTGTGCTGAACTTCGAGCTGCTACCAGATTA
TCCATCCTCCTCCCCACCTTCATTTACACTTAGTGGCAAGTGGCTGCCACCAGCTCAGCCGTCTGCTCTGTGCAGGCACG
CAGACAACCTGTGGAAGGAACACCTAGGCAGGTGGTCCTGTTTGCCCGGATGCAGTTTCTTAAGGAAGAGACCCTCGCAT
ACCAGAATACTGTCTCTCCTTTTGAACTCAAGATGGGATCTCAGAAAAAAAGCGCTCAGGCTTCTTCCAACAAAGAGTGG
AGTTTGGAGGAGCTGCTGGATCCGACGTAGACCAAGAGGAAGTCGTAGATGAGGGAGCTGTACAAGATGTGGAATCATTG
TCAAGTCTGATCCAGGAAACCTTGGACTTTGATCAAGCTCAGTAGATAAAATGCTTTAACAGTAAATTGTTGCTTTGCAA
TATCTGTTTCTGTGAGAAGCTGGGTGGTGAACGCATGTGCTTCTTGGAGTGCAGGCATGTGTATTGCAAAGCTTGCCTGA
AGGCCTACTTTGAAATCCAGATCAAAGATGGCCAAGTTCAGTGCCTCAACTGTCCAGAACCAAAGTGCCCTTCAGTGGCT
ACTCCTGGTCAGGTCAAGGAGCTGGTAGAAGCAGAATCATTTGCTTGCTTCAACTGCCTTGTCATGCAGTCCACCTTGGA
CCTGATGGCAGGCATGGTGTACTGCCCCTGCCCATGCTGCCAGCTGCTAGCTGCCTGTGATGCAGGAGCTGGGCTGCACC
ATGGGCATCTGCTCCGGGTGCAATTTTGCCTTCTGTATCTTGTGCAGATTGACCTACCACGGGGTCTCTGCTCCATGTAA
GGTGACTACAGAGAAACTGATAGACTTATGGAATGAGTCCCTGCAAGCAGATGAGACCAATAAAAGATTTTTGGAACAGA
GATATGATACGAGGGTTATTCAGAGGTCACTGGAAGAGATGGAGAGTAATGAGTGGCTGGAAAAGAACTCAGAGAGCTGC
CCCTGTTGTGGGGCCCCATACAGAAATTTGACGGCAGTAACAGATGATGTGTACTGGCTGTATGCAGTATTTCTGTGGGA
TTTGCATGGGTTTTCTCTCTGGAGCAAACCCTTAGCAACACTTCCCTGATCCTGATTCCCTGTGTTTCAATCAATTGTTC
CATACCATGGATGTAAATGGAGATATTTGGGAAGATGAGATTGAAGAC
ORF - retro_ocun_340 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
78.72 % |
Parental protein coverage: |
99.58 % |
Number of stop codons detected: |
4 |
Number of frameshifts detected |
9 |
Retrocopy - Parental Gene Alignment:
Parental | SEDREAQDDELLALASIYDG-DEFRKAESVQGGETRI-YLDLPQNFKIFVSGNS-NECLQNSGFESTICF |
| SE..EAQ.DELLAL.SIYD..DE..KA.SVQ..ETRI.YLDLPQNFKIFVS..S..ECLQN.G..ST..F |
Retrocopy | SEY*EAQEDELLALESIYDR>DELIKAKSVQSRETRI<YLDLPQNFKIFVSSTS<SECLQNGGSQSTVDF |
|
Parental | LP-PLVLNFELPPDYPSSSPPSFTLSGKWLSPTQLSALCKHLDNLWEEHRG-SVVLFAWMQFLKEETLAY |
| LP..LVLNFEL.PDYPSSSPPSFTLSGKWL.P.Q.SALC.H.DNLW.EH.G..VVLFA.MQFLKEETLAY |
Retrocopy | LP<SLVLNFELLPDYPSSSPPSFTLSGKWLPPAQPSALCRHADNLWKEHLG<QVVLFARMQFLKEETLAY |
|
Parental | LNIVSPFELKMGSQKKVQRRTAQASSTKE-LEFGGATGSDVDQEEVVDERAVQDVESLSSLIQEILDFDQ |
| .N.VSPFELKMGS....Q...AQASS.KE..EFGGA.GSDVDQEEVVDE.AVQDVESLSSLIQE.LDFDQ |
Retrocopy | QNTVSPFELKMGS----QKKSAQASSNKE<VEFGGAAGSDVDQEEVVDEGAVQDVESLSSLIQETLDFDQ |
|
Parental | AQQTKCFNSKLFLCSICFCEKLGSECMYFLECRHVYCKACLKDYFEIQIKDGQVQCLNCPEPKCPSVATP |
| AQ..KCFNSKL.LC.ICFCEKLG.E.M.FLECRHVYCKACLK.YFEIQIKDGQVQCLNCPEPKCPSVATP |
Retrocopy | AQ*IKCFNSKLLLCNICFCEKLGGERMCFLECRHVYCKACLKAYFEIQIKDGQVQCLNCPEPKCPSVATP |
|
Parental | GQVKELVEAELFARYDRLLLQSSLDLMADVVY--CP-RPCCQLPVMQEPGCTMGICSSCNFAFCTLCRLT |
| GQVKELVEAE.FA....L..QS.LDLMA..VY..CP....C.LPVMQE.GCTMGICS.CNFAFC.LCRLT |
Retrocopy | GQVKELVEAESFACFNCLVMQSTLDLMAGMVYCPCP>AASC*LPVMQELGCTMGICSGCNFAFCILCRLT |
|
Parental | YHGVS-PCKVTAEKLIDLRNEYLQADEANKRFLEQRYGKRVIQKALEEMESKEWLEKNSKSCPCCGT-PI |
| YHGVS.PCKVT.EKLIDL.NE.LQADE.NKRFLEQRY..RVIQ..LEEMES.EWLEKNS.SCPCCG..PI |
Retrocopy | YHGVSAPCKVTTEKLIDLWNESLQADETNKRFLEQRYDTRVIQRSLEEMESNEWLEKNSESCPCCGA<PI |
|
Parental | QKLDGCNK-MTCTGCMQYFCWICMGFLSRANPYKHFTDPDSLCFNRLFHAVDVNGDIWEDEIED |
| QK.DG.N..M.CTGCMQYFC.ICMGFLS.ANP..HF.DPDSLCFN.LFH..DVNGDIWEDEIED |
Retrocopy | QKFDGSNR<MMCTGCMQYFCGICMGFLSGANP*QHFPDPDSLCFNQLFHTMDVNGDIWEDEIED |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
Library |
Retrocopy expression |
Parental gene expression |
SRP017611_brain |
0 .00 RPM |
63 .30 RPM |
SRP017611_kidney |
0 .00 RPM |
97 .10 RPM |
SRP017611_liver |
0 .00 RPM |
31 .06 RPM |
Oryctolagus cuniculus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_ocun_340 retrocopy.
Oryctolagus cuniculus was not studied using FANTOM5 data.
retro_ocun_340 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_ocun_340 has 0 orthologous retrocopies within eutheria group .
Parental genes homology:
Parental genes homology involve
4 parental genes, and
4 retrocopies.