RetrogeneDB ID: | retro_ocun_360 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | 1:48888337..48888879(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MND1 | ||
Ensembl ID: | ENSOCUG00000004594 | ||
Aliases: | None | ||
Description: | meiotic nuclear divisions 1 homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:24839] |
Percent Identity: | 82.07 % |
Parental protein coverage: | 88.29 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 3 |
Parental | DVFQLKDMEKIAPKEKGITAMSVKDVL-QSLVDDGMVDCERIGTSNYYWAFPSKALHVRKRKVEVLESQL |
DVFQ.KDMEKIAPKE...T..S.KD...QSLVDDG.VDCERIGTS.YYWAFP.KALH.R.RKVEVLESQL | |
Retrocopy | DVFQRKDMEKIAPKENSVTTTSGKDIP<QSLVDDGVVDCERIGTSSYYWAFPRKALHARNRKVEVLESQL |
Parental | SEGNQKYANLQK-NIEKAKIGRHETEERAMIAKELSSLREERDQLKAEVEK-YKECDPQVVEEIRQANKI |
SEGNQKYAN..K.N.EKAKIG.HE.EERAMIAKELSSL.EER.QLKA.VEK.Y.ECDPQVVEEIRQANKI | |
Retrocopy | SEGNQKYANHRK<NMEKAKIGLHEMEERAMIAKELSSLPEEREQLKAQVEK>YEECDPQVVEEIRQANKI |
Parental | AKEAANRWTDNIFAIKSWAKRKFGLEENKIDKNFGIPEDFDYID |
AKEA.NR.TDNI.AIKSWAKRKF.LEENKIDKN.GIPEDF..ID | |
Retrocopy | AKEAGNR*TDNIVAIKSWAKRKF*LEENKIDKNLGIPEDFNNID |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 0 .44 RPM |
SRP017611_kidney | 0 .00 RPM | 0 .10 RPM |
SRP017611_liver | 0 .00 RPM | 0 .23 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000018446 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000001993 | 5 retrocopies | |
Dipodomys ordii | ENSDORG00000004514 | 1 retrocopy | |
Felis catus | ENSFCAG00000022084 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000004937 | 1 retrocopy | |
Mus musculus | ENSMUSG00000033752 | 2 retrocopies | |
Nomascus leucogenys | ENSNLEG00000005936 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000004594 | 2 retrocopies |
retro_ocun_1865, retro_ocun_360 ,
|
Ochotona princeps | ENSOPRG00000015738 | 1 retrocopy | |
Sorex araneus | ENSSARG00000011001 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000004475 | 1 retrocopy |