>retro_ocun_378
GGTATCCGCCCCCAGATCATGAACGGCCCCCTGCACCCCCGCCCCCTGGTGGCCCTGCTGGACGGCAGAGACTGCACCGT
GGAGATGCCCATCCTGAAGGACCTGGCCACCGTGGCCTTCTGTGACGCGCAGTCCACGCAGGAGATCCACGAGAAGGTGC
TGAACGAGGCCGTGGGCGCCATGATGTACCACACCATCACCCTCACCAGGGAGGACCTGGAGAAGTTCAAGGCCCTCAGA
GTGATCGTGCGGATCGGGAGCGGCTACGACAACGTCGACGTCAAGGCCGCCGGCGAGCTAGGGATCGCCGTGTGCAACAT
CCCATCTGCAGCCGTGGAAGAGACGGCCGATTCCACCATATGCCACATCCTCAACCTGTACCGGCGGAACACGTGGCTCT
ACCAGGCGCTGCGGGAAGGCACGCGGGTGCAGAGCGTGGAGCAGATCCGCGAGGTGGCCTCGGGGGCGGCCCGCATTCGT
GGGGAGACGCTGGGCCTCATCGGCTTTGGTCGCACGGGGCAGGCGGTTGCTGTTCGAGCCAAGGCCTTTGGATTCAGCGT
CATATTTTATGACCCCTACTTGCAGGATGGGATAGAGCGGTCCCTCGGCGTGCAGAGGGTCTACACCCTGCAGGACCTGC
TGTACCAGAGCGACTGCGTCTCCCTGCACTGCAACCTCAACGAGCATAACCACCACCTCATCAATGATTTCACCATAAAG
CAGATGAGGCAAGGAGCCTTCCTGGTGAATGCGGCCCGCGGGGGGCTGGTGGACGAGAAAGCCTTAGCCCAGGCCCTCAA
GGAGGGCAGGATACGAGGGGCGGCCCTCGACGTGCACGAGTCGGAGCCCTTTAGCTTTGCTCAGGGTCCGCTGAAAGACG
CCCCGAACCTCATCTGTACCCCGCACACGGCCTGGTACAGCGAGCAAGCCTCGCTAGAGATGAGAGAGGCCGCCGCCACC
GAGATCCGCCGAGCAATCACAGGTCGCATCCCGGAAAGCTTGAGGAACTGTGTCAACAAGGAGTTCTTCGTCACTTCAGC
TCCTTGGTCAGTAATGGATCAGCAAGCAATTCATCCCGAGCTCAATGGCGCCACATACAGATACCCGCCAGGCATCGTGG
GCGTGGCTCCGGGAGGACTTCCTGCAGCCATGGAAGGGATCATCCCTGGAGGCATCCCCGTGACTCACAACCTCCCAACA
GTGGCCCACCCCTCTCAAGCTCCCTCGCCCAACCAGCCCACAAAACACGGGGACAATCGAGAGCACCCCAACGAGCAA
ORF - retro_ocun_378 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
100. % |
Parental protein coverage: |
98.16 % |
Number of stop codons detected: |
0 |
Number of frameshifts detected |
0 |
Retrocopy - Parental Gene Alignment:
Parental | GIRPQIMNGPLHPRPLVALLDGRDCTVEMPILKDLATVAFCDAQSTQEIHEKVLNEAVGAMMYHTITLTR |
| GIRPQIMNGPLHPRPLVALLDGRDCTVEMPILKDLATVAFCDAQSTQEIHEKVLNEAVGAMMYHTITLTR |
Retrocopy | GIRPQIMNGPLHPRPLVALLDGRDCTVEMPILKDLATVAFCDAQSTQEIHEKVLNEAVGAMMYHTITLTR |
|
Parental | EDLEKFKALRVIVRIGSGYDNVDVKAAGELGIAVCNIPSAAVEETADSTICHILNLYRRNTWLYQALREG |
| EDLEKFKALRVIVRIGSGYDNVDVKAAGELGIAVCNIPSAAVEETADSTICHILNLYRRNTWLYQALREG |
Retrocopy | EDLEKFKALRVIVRIGSGYDNVDVKAAGELGIAVCNIPSAAVEETADSTICHILNLYRRNTWLYQALREG |
|
Parental | TRVQSVEQIREVASGAARIRGETLGLIGFGRTGQAVAVRAKAFGFSVIFYDPYLQDGIERSLGVQRVYTL |
| TRVQSVEQIREVASGAARIRGETLGLIGFGRTGQAVAVRAKAFGFSVIFYDPYLQDGIERSLGVQRVYTL |
Retrocopy | TRVQSVEQIREVASGAARIRGETLGLIGFGRTGQAVAVRAKAFGFSVIFYDPYLQDGIERSLGVQRVYTL |
|
Parental | QDLLYQSDCVSLHCNLNEHNHHLINDFTIKQMRQGAFLVNAARGGLVDEKALAQALKEGRIRGAALDVHE |
| QDLLYQSDCVSLHCNLNEHNHHLINDFTIKQMRQGAFLVNAARGGLVDEKALAQALKEGRIRGAALDVHE |
Retrocopy | QDLLYQSDCVSLHCNLNEHNHHLINDFTIKQMRQGAFLVNAARGGLVDEKALAQALKEGRIRGAALDVHE |
|
Parental | SEPFSFAQGPLKDAPNLICTPHTAWYSEQASLEMREAAATEIRRAITGRIPESLRNCVNKEFFVTSAPWS |
| SEPFSFAQGPLKDAPNLICTPHTAWYSEQASLEMREAAATEIRRAITGRIPESLRNCVNKEFFVTSAPWS |
Retrocopy | SEPFSFAQGPLKDAPNLICTPHTAWYSEQASLEMREAAATEIRRAITGRIPESLRNCVNKEFFVTSAPWS |
|
Parental | VMDQQAIHPELNGATYRYPPGIVGVAPGGLPAAMEGIIPGGIPVTHNLPTVAHPSQAPSPNQPTKHGDNR |
| VMDQQAIHPELNGATYRYPPGIVGVAPGGLPAAMEGIIPGGIPVTHNLPTVAHPSQAPSPNQPTKHGDNR |
Retrocopy | VMDQQAIHPELNGATYRYPPGIVGVAPGGLPAAMEGIIPGGIPVTHNLPTVAHPSQAPSPNQPTKHGDNR |
|
Parental | EHPNEQ |
| EHPNEQ |
Retrocopy | EHPNEQ |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
Library |
Retrocopy expression |
Parental gene expression |
SRP017611_brain |
2 .10 RPM |
17 .00 RPM |
SRP017611_kidney |
3 .24 RPM |
20 .17 RPM |
SRP017611_liver |
0 .23 RPM |
2 .70 RPM |
Oryctolagus cuniculus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_ocun_378 retrocopy.
Oryctolagus cuniculus was not studied using FANTOM5 data.
retro_ocun_378 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_ocun_378 has 0 orthologous retrocopies within eutheria group .
Parental genes homology:
Parental genes homology involve
6 parental genes, and
17 retrocopies.
Species |
Parental gene accession |
Retrocopies number |
|
Callithrix jacchus | ENSCJAG00000012539 | 2 retrocopies |
|
Cavia porcellus | ENSCPOG00000008397 | 1 retrocopy |
|
Homo sapiens | ENSG00000175029 | 1 retrocopy |
|
Oryctolagus cuniculus | ENSOCUG00000007076 | 1 retrocopy |
retro_ocun_378 ,
|
Otolemur garnettii | ENSOGAG00000024152 | 2 retrocopies |
|
Pongo abelii | ENSPPYG00000002746 | 10 retrocopies |
retro_pabe_1706, retro_pabe_1710, retro_pabe_1711, retro_pabe_1719, retro_pabe_1737, retro_pabe_1750, retro_pabe_1773, retro_pabe_3228, retro_pabe_3230, retro_pabe_3587,
|