RetrogeneDB ID: | retro_ocun_502 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | 12:48237440..48238412(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSOCUG00000026481 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CSNK1A1 | ||
Ensembl ID: | ENSOCUG00000006669 | ||
Aliases: | CSNK1A1, CKIALPHA | ||
Description: | casein kinase 1, alpha 1 (CSNK1A1), mRNA [Source:RefSeq mRNA;Acc:NM_001082373] |
Percent Identity: | 94.75 % |
Parental protein coverage: | 99.69 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MASSSGSKAEFIVGGKYKLVRKIGSGSFGDIYLAINITNGEEVAVKLESQKARHPQLLYESKLYKILQGG |
MASSSGSKAE.IVGGKY.LVRKIGSGSFGDIYLA.N.TN.EEVAVKLESQKARHPQLLYES.LYKILQGG | |
Retrocopy | MASSSGSKAELIVGGKYQLVRKIGSGSFGDIYLAVNLTNSEEVAVKLESQKARHPQLLYESRLYKILQGG |
Parental | VGIPHIRWYGQEKDYNVLVMDLLGPSLEDLFNFCSRRFTMKTVLMLADQMISRIEYVHTKNFIHRDIKPD |
VGIPHIRWYGQEKDYNVLVMDLLGPSLEDLF.FCSR.FTMKTVLMLADQMISRIEYVHTKNFIHRDIKPD | |
Retrocopy | VGIPHIRWYGQEKDYNVLVMDLLGPSLEDLFSFCSRKFTMKTVLMLADQMISRIEYVHTKNFIHRDIKPD |
Parental | NFLMGIGRHCNKLFLIDFGLAKKYRDNRTRQHIPYREDKNLTGTARYASINAHLGIEQSRRDDMESLGYV |
NFLMGIGRHCNKLF.IDFGLAKKYRDNRTRQHIPYREDKNLTGTARYASINAHLGIEQSRRDDMESLGYV | |
Retrocopy | NFLMGIGRHCNKLFVIDFGLAKKYRDNRTRQHIPYREDKNLTGTARYASINAHLGIEQSRRDDMESLGYV |
Parental | LMYFNRTSLPWQGLKAATKKQKYEKISEKKMSTPVEVLCKGFPAEFAMYLNYCRGLRFEEAPDYMYLRQL |
LMYFNRTSLPWQGLKAATKKQKYEKISEKKMSTPVEVLCKGFP.EFAMYLNYCRGLRFEEAPDYMYLRQL | |
Retrocopy | LMYFNRTSLPWQGLKAATKKQKYEKISEKKMSTPVEVLCKGFPTEFAMYLNYCRGLRFEEAPDYMYLRQL |
Parental | FRILFRTLNHQYDYTFDWTMLKQKAAQQAASSSGQGQQAQTPTG |
FRILFRTL.HQYDYTFDWTMLKQK..QQAASSSGQ.QQ.Q.P.G | |
Retrocopy | FRILFRTLHHQYDYTFDWTMLKQKGTQQAASSSGQVQQPQSPAG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 165 .73 RPM |
SRP017611_kidney | 0 .00 RPM | 128 .72 RPM |
SRP017611_liver | 0 .00 RPM | 57 .04 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000005326 | 2 retrocopies | |
Canis familiaris | ENSCAFG00000018286 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000021121 | 1 retrocopy | |
Homo sapiens | ENSG00000113712 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000013926 | 3 retrocopies | |
Myotis lucifugus | ENSMLUG00000002910 | 4 retrocopies | |
Macaca mulatta | ENSMMUG00000001758 | 2 retrocopies | |
Monodelphis domestica | ENSMODG00000009937 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000006669 | 7 retrocopies |
retro_ocun_1068, retro_ocun_1098, retro_ocun_1506, retro_ocun_500, retro_ocun_502 , retro_ocun_506, retro_ocun_644,
|
Sorex araneus | ENSSARG00000011446 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000015356 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000014435 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000022141 | 1 retrocopy | |
Drosophila melanogaster | FBgn0015024 | 4 retrocopies |