>retro_ocun_648
CAGGCCTGGATTAAAGTGGGAGAAGCAGCGCTATGTAAACAAGAAATAAATAAGAGGAATCGGAGTAGAATGCATAATTG
GGCTTGAATATAGAACAAAGAGCCCTTGGAGAGATTCAGAATGTGGGTGAGGGCCACAAGGCCCACGGGGTACCTGGCAG
TCCTCAGAGTCCTGGCAGTCCACCCTGTGGGAGCAGGCCCAAAGCGGGCCCCAGGGTGGAAGGTCTCAGAGTCAGGAGAG
GCATAACCGAATGGAAAGAGATAGATGGCGTAGCATCCACATTTGTTGGGACGAGTTGAATCTCTAGTTCCGTTCTGCAA
CGCAGAGATGGACAACGCGACAGCTCTTCAGTGGAGCACGGCGTTCCTGAAGTACATTCAATAAAGACACGGAGATTCTC
TCACGAAGGTGTTTTGTGGTAAAATTGGCAGAAGGCTAAAGCTGACCAGACCAGACTCCCTGGTCACCTGTCCCGCAGAG
TAGCACCTTGATGGAGATCAAGTGATTGAG
ORF - retro_ocun_648 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
71.35 % |
Parental protein coverage: |
56.86 % |
Number of stop codons detected: |
2 |
Number of frameshifts detected |
3 |
Retrocopy - Parental Gene Alignment:
Parental | QVWIKVGEEALCKQAINKRNRSRIRQ-LDASTERRALGEIQNVGE-GPAAAQA-WQSSESSQCPLGEQAQ |
| Q.WIKVGE.ALCKQ.INKRNRSR....L....E.RALGEIQNVGE.GP......WQSSES.Q..L.EQAQ |
Retrocopy | QAWIKVGEAALCKQEINKRNRSRMHN<LGLNIEQRALGEIQNVGE<GPQGPRGTWQSSESWQSTLWEQAQ |
|
Parental | SGPQGGRSQRRERHNRMERDRRRRIRICCDELNL-LVPFCNAETDKATTLQWTTAFLKYIQERHGDALKK |
| SGPQGGRSQ..ERHNRMERDR.R.I.IC.DELNL.LVPFCNAE.D.AT.LQW.TAFLKYIQ.RHGD.L.K |
Retrocopy | SGPQGGRSQSQERHNRMERDRWRSIHICWDELNL<LVPFCNAEMDNATALQWSTAFLKYIQ*RHGDSLTK |
|
Parental | EFESVFCGKTGRRLKLTRPDSLITCPAQGSLQGSPSME |
| ....VFCGK.GRRLKLTRPDSL.TCPA...L.G....E |
Retrocopy | ----VFCGKIGRRLKLTRPDSLVTCPAE*HLDGDQVIE |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
Library |
Retrocopy expression |
Parental gene expression |
SRP017611_brain |
0 .00 RPM |
2 .10 RPM |
SRP017611_kidney |
0 .00 RPM |
0 .20 RPM |
SRP017611_liver |
0 .00 RPM |
0 .00 RPM |
Oryctolagus cuniculus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_ocun_648 retrocopy.
Oryctolagus cuniculus was not studied using FANTOM5 data.
retro_ocun_648 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_ocun_648 has 0 orthologous retrocopies within eutheria group .
Parental genes homology:
Parental genes homology involve
1 parental gene, and
1 retrocopy.