>retro_ocun_662
ATGTTGGTGTTAAGGCCGCTAGACAAGCTGCCCGGCCTGAACACGGCCACCCTCTTGCTGGTGGGCACAGACGATGCTCT
TCTGCAGCAGCGGGCGGACTCCAGGCTCAAGATGGACTGCGCCTCGGAGCTGAGGGTCCACCTTGCAAGGTCCCTCCCTC
TGCCCTCCAACGTGAATCGGCCTCTGGTGGACCTGCTCGTATTTGTGATTAATCTTCACAGCAAATACAGCCTGCAGAGC
GTGGAGAAGTCCCTGTACCACGTGGACGCCAGCTTCTTCCTAGGGAAGGCGTGCTTCCTGGCCGCAGGCGCTGGGCGGGA
GAGCCACTGCAGCGTTCATCGGAACACCATCATGAGGCTGGCGCACACCTACCGAAGCCCCGTGCTGTTCTGTGACCTGG
AGGTGGAAGGCTTCCGAGCCACCATGGCGCAGCGCCTGGTACGCATGCTGCAGATCTGTGCTGGCCACATGCCCAGCGTC
TCGGCCTGAGCCTGCTGTCCCTGCTCAGGAGCTCCGAGAGCCCCTCCCTGAAG
ORF - retro_ocun_662 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
87.15 % |
Parental protein coverage: |
98.89 % |
Number of stop codons detected: |
0 |
Number of frameshifts detected |
1 |
Retrocopy - Parental Gene Alignment:
Parental | MSVLRPLDKLPGLNTATVLLVGADDALLQRLADSMLKTDCASELRVHLARSLPLPSNVNRPRVDLLVFVI |
| M.VLRPLDKLPGLNTAT.LLVG.DDALLQ..ADS.LK.DCASELRVHLARSLPLPSNVNRP.VDLLVFVI |
Retrocopy | MLVLRPLDKLPGLNTATLLLVGTDDALLQQRADSRLKMDCASELRVHLARSLPLPSNVNRPLVDLLVFVI |
|
Parental | NLHSKYSLQSVEKSLHHVDASFFLGKACFLATGAGRENLCSVHRNTIVRLARTYRSPVLFCDLEVEGSRA |
| NLHSKYSLQSVEKSL.HVDASFFLGKACFLA.GAGRE..CSVHRNTI.RLA.TYRSPVLFCDLEVEG.RA |
Retrocopy | NLHSKYSLQSVEKSLYHVDASFFLGKACFLAAGAGRESHCSVHRNTIMRLAHTYRSPVLFCDLEVEGFRA |
|
Parental | AMAQRLARMLQISAGHVPGVSA-MSLLSLLRSSESPSLE |
| .MAQRL.RMLQI.AGH.P.VSA..SLLSLLRSSESPSL. |
Retrocopy | TMAQRLVRMLQICAGHMPSVSA<LSLLSLLRSSESPSLK |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
Library |
Retrocopy expression |
Parental gene expression |
SRP017611_brain |
0 .00 RPM |
0 .39 RPM |
SRP017611_kidney |
0 .00 RPM |
0 .71 RPM |
SRP017611_liver |
0 .00 RPM |
0 .23 RPM |
Oryctolagus cuniculus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_ocun_662 retrocopy.
Oryctolagus cuniculus was not studied using FANTOM5 data.
retro_ocun_662 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_ocun_662 has 0 orthologous retrocopies within eutheria group .
Parental genes homology:
Parental genes homology involve
1 parental gene, and
1 retrocopy.