RetrogeneDB ID: | retro_ocun_741 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | 14:20339782..20340262(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | GCA | ||
Ensembl ID: | ENSOCUG00000002868 | ||
Aliases: | None | ||
Description: | grancalcin, EF-hand calcium binding protein [Source:HGNC Symbol;Acc:15990] |
Percent Identity: | 95. % |
Parental protein coverage: | 74.42 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | FTAVAGQDGEVDAEELQRCLTESGISGTYSPFSLETCRIMIAMLDRDYTGKMGFNEFKELWAALTAWKEN |
.....G.DGEVDAEELQRCLTESGISG.YSPFSLETCRIMIAMLDRDYTGKMGFNEFKELWAALTAWKEN | |
Retrocopy | YPGYGGGDGEVDAEELQRCLTESGISGAYSPFSLETCRIMIAMLDRDYTGKMGFNEFKELWAALTAWKEN |
Parental | FMTIDRDRSGTVEHHELSQSIAIMGYRLSPQTLNTIVRRYSKNGRIFFDDYVACCVKLRALTDFFRRRDH |
FMTIDRDRSGTVEHHELSQSIAIMGYRLSPQTLNTIVRRYSKNGRIFFDDYV.CCVKLRALTDFFRRRDH | |
Retrocopy | FMTIDRDRSGTVEHHELSQSIAIMGYRLSPQTLNTIVRRYSKNGRIFFDDYVSCCVKLRALTDFFRRRDH |
Parental | LQQGFVNFVYDDFLQGTMAI |
LQQGFVNFVYDDFLQGTMAI | |
Retrocopy | LQQGFVNFVYDDFLQGTMAI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .44 RPM | 11 .31 RPM |
SRP017611_kidney | 0 .00 RPM | 2 .74 RPM |
SRP017611_liver | 0 .00 RPM | 0 .54 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000006229 | 2 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000012124 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000002868 | 2 retrocopies |
retro_ocun_1786, retro_ocun_741 ,
|
Oryctolagus cuniculus | ENSOCUG00000005744 | 1 retrocopy |