RetrogeneDB ID: | retro_ocun_842 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | 15:79429455..79430104(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | VAMP7 | ||
Ensembl ID: | ENSOCUG00000001270 | ||
Aliases: | None | ||
Description: | vesicle-associated membrane protein 7 [Source:HGNC Symbol;Acc:11486] |
Percent Identity: | 76.82 % |
Parental protein coverage: | 99.09 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | ILFAVVAR-GTTILAKHAWCGGNFLEVTEQILAKIPSENNKLTYSHGNYLFHYICQDRIVYLCITDDD-F |
..FA.VAR.GTTILAKHAWCG.NFL.VTEQIL.KI..ENNKL.YSH.NYLFHYI.QD.IVYL.IT....F | |
Retrocopy | LFFALVAR<GTTILAKHAWCGRNFLDVTEQILTKILYENNKLSYSHDNYLFHYI*QDGIVYLRITNNI<F |
Parental | ERSRAFNFLNEVKKRFQTTYGSRAQTALPYAMNSEFSSVLAAQLKHHSENKGLDKVMETQAQVDELKGIM |
E.S.AFNFLNEV.KRFQT.Y.SRA.TA.PYAMNS.FS.VL.AQLK.HSENKGLDK..ETQAQV..LKGI. | |
Retrocopy | ECSQAFNFLNEVRKRFQTSYSSRAETAFPYAMNSKFSNVLTAQLKDHSENKGLDKEVETQAQVVKLKGIL |
Parental | VRNIDLVAQRGERLELLIDKTENLVDSSVTFKTTSRNLARAMCMKNLKLTIIIIIVSIVFIYIIVSTLCG |
V.N.DL..QR.ERLELLIDKTEN.VDSSVTFK..SRN.ARAMC.KNLKLT..I..VSIVFIYIIVST.CG | |
Retrocopy | VKNTDLIKQRRERLELLIDKTENFVDSSVTFKAASRNPARAMCLKNLKLT-VITVVSIVFIYIIVSTACG |
Parental | GFTWPNCVKK |
GFTWPNC.K. | |
Retrocopy | GFTWPNCMKR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 44 .92 RPM |
SRP017611_kidney | 0 .00 RPM | 61 .42 RPM |
SRP017611_liver | 0 .00 RPM | 15 .18 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000016289 | 2 retrocopies | |
Cavia porcellus | ENSCPOG00000024405 | 1 retrocopy | |
Mus musculus | ENSMUSG00000051412 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000001270 | 1 retrocopy |
retro_ocun_842 ,
|
Pteropus vampyrus | ENSPVAG00000000829 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000025036 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000010643 | 1 retrocopy |