>retro_ocun_94
GACCTGAAGAACCAGCACCTGGCCAAGAAGTCGGAAGTGAATGACAAAAATCACAAGATGGAGGAGATTCGTAAGAAACT
TGGGGGCGCCAACAAGGAAATGACCCATTTACAAAAGGAGGTGACAGCCATCGAGACCAAGCTGGAACAGAAGCGCAGCG
ACCGCCACAACTTGCTCCAGGCCTGCAAGATGCAGGATATCAAGCTGCCGCTGTCGAAGGGCACCATGGATGATATTAGT
CAGGAAGAGGGTAGCTCCCAGGGGGAGGATTCAGTGAGTGCTTCACAAAGAACGTCCAGCATCTACGCACGAGAGGCCCT
CATTGAGATCGACTACGGTGACCTGTGTGAGGATTTGAAGGATGCCCAGGCTGAGGAGGACATCAAACAGGAGATGAGCA
CACTGCAGCAGAAGCTGAATGAGCAGCAGAGTGTGCTTCAGCGTATTGCTGCCCCCAACATGAAAGCCATGGAAAAGCTG
GAGAGTGTCCGTGACAAGTTCCAGGAGACCTCTGATGAGTTTGAGGCAGTCCGAAAGCGAGCAAAGAAGGCCAAGCAGGC
ATTCGAACAGATCAAGAAGGAGCGCTTTGACCGCTTCAATGCTTGTTTTGAATCTGTGGCTACCAACATTGATGAGATCT
ATAAGGCTCTGTCCCACAACAGCAGTGCCCAGGCATTCCTGGGTCCTGAGAACCCAGAGGAGCCCTACTTGGATGGCATC
AACTATAACTGCGTGGCTCCTGGCAAACGCTTCCGGCCTATGGACAACTTGTCAGGAGGGGAGAAGACAGTGGCAGCTTT
GGCCCTGCTTTTTGCCATCCACAGCTACAAGCCAGCCCCCTTCTTCATCCTGGATGAGATCGATGCTGCCTTGGATAACA
CCAACATTGGCAAGGTAGCAAATTACATCAAGGAGCAGTCGACTTGGAACTTCCAGGCCATCGTCATCTCTCTCAAGGAA
GAGTTCTACACCAAGGCTGAGAGCCTCATTGGAGTCTATCCCGAGCAAGGGGACTGTGTGATCAGCAAAGTCCTGACCTT
CGACCTCACCAAGTACCCAGATGCCAACCCCAACCCCAATGAGCAGTAA
ORF - retro_ocun_94 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
97.79 % |
Parental protein coverage: |
100. % |
Number of stop codons detected: |
0 |
Number of frameshifts detected |
0 |
Retrocopy - Parental Gene Alignment:
Parental | DLKNQHLAKKSEVNDKNHEMEEIRKKLGGANKEMTHLQKEVTAIETKLEQKRSDRHNLLQACKMQDIKLP |
| DLKNQHLAKKSEVNDKNH.MEEIRKKLGGANKEMTHLQKEVTAIETKLEQKRSDRHNLLQACKMQDIKLP |
Retrocopy | DLKNQHLAKKSEVNDKNHKMEEIRKKLGGANKEMTHLQKEVTAIETKLEQKRSDRHNLLQACKMQDIKLP |
|
Parental | LSKGTMDDISQEEGSSQGEDSVSGSQRTSSIYAREALIEIDYGDLCEDLKDAQAEEEIKQEMNTLQQKLN |
| LSKGTMDDISQEEGSSQGEDSVS.SQRTSSIYAREALIEIDYGDLCEDLKDAQAEE.IKQEM.TLQQKLN |
Retrocopy | LSKGTMDDISQEEGSSQGEDSVSASQRTSSIYAREALIEIDYGDLCEDLKDAQAEEDIKQEMSTLQQKLN |
|
Parental | EQQSVLQRIAAPNMKAMEKLESVRDKFQETSDEFEAARKRAKKAKQAFEQIKKERFDRFNACFESVATNI |
| EQQSVLQRIAAPNMKAMEKLESVRDKFQETSDEFEA.RKRAKKAKQAFEQIKKERFDRFNACFESVATNI |
Retrocopy | EQQSVLQRIAAPNMKAMEKLESVRDKFQETSDEFEAVRKRAKKAKQAFEQIKKERFDRFNACFESVATNI |
|
Parental | DEIYKALSRNSSAQAFLGPENPEEPYLDGINYNCVAPGKRFRPMDNLSGGEKTVAALALLFAIHSYKPAP |
| DEIYKALS.NSSAQAFLGPENPEEPYLDGINYNCVAPGKRFRPMDNLSGGEKTVAALALLFAIHSYKPAP |
Retrocopy | DEIYKALSHNSSAQAFLGPENPEEPYLDGINYNCVAPGKRFRPMDNLSGGEKTVAALALLFAIHSYKPAP |
|
Parental | FFVLDEIDAALDNTNIGKVANYIKEQSTCNFQAIVISLKEEFYTKAESLIGVYPEQGDCVISKVLTFDLT |
| FF.LDEIDAALDNTNIGKVANYIKEQST.NFQAIVISLKEEFYTKAESLIGVYPEQGDCVISKVLTFDLT |
Retrocopy | FFILDEIDAALDNTNIGKVANYIKEQSTWNFQAIVISLKEEFYTKAESLIGVYPEQGDCVISKVLTFDLT |
|
Parental | KYPDANPNPNEQ |
| KYPDANPNPNEQ |
Retrocopy | KYPDANPNPNEQ |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
Library |
Retrocopy expression |
Parental gene expression |
SRP017611_brain |
1 .82 RPM |
34 .27 RPM |
SRP017611_kidney |
1 .93 RPM |
25 .24 RPM |
SRP017611_liver |
1 .08 RPM |
18 .58 RPM |
Oryctolagus cuniculus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_ocun_94 retrocopy.
Oryctolagus cuniculus was not studied using FANTOM5 data.
retro_ocun_94 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_ocun_94 has 0 orthologous retrocopies within eutheria group .
Parental genes homology:
Parental genes homology involve
1 parental gene, and
1 retrocopy.