RetrogeneDB ID: | retro_ocun_955 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | 17:71588022..71588661(-) | ||
Located in intron of: | ENSOCUG00000029442 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PCMT1 | ||
Ensembl ID: | ENSOCUG00000000499 | ||
Aliases: | None | ||
Description: | protein-L-isoaspartate (D-aspartate) O-methyltransferase [Source:HGNC Symbol;Acc:8728] |
Percent Identity: | 72.35 % |
Parental protein coverage: | 73.61 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 3 |
Parental | SGGDGSSSGGDSGDASGAVTVWEVVSLLAKLLGTVAALKVVLYLLRVCLAMAWKSGGASHSELIH-NLRK |
SGG......G.S.D.S..VT..EV.S.L.KLLG...ALK.VLYLL.VCL.MAWKS.GASH..L.H..L.K | |
Retrocopy | SGGGNGNKSGYSEDTSRVVTMREVISFLVKLLGPITALKLVLYLL*VCLVMAWKSSGASHL*LVH<HLHK |
Parental | NGIIKTDKVFEVMLATDRSHYAKCNPYMDSPQSIGFQATISAPHMHAYALELLFDQLHEGAKALDV-GSG |
NGIIKTDKVFEVMLAT.RSH.AKCNPYM.SPQ..GFQATI.AP....YA.ELLFD.LHEGAKALDV...G | |
Retrocopy | NGIIKTDKVFEVMLATNRSH*AKCNPYMNSPQPTGFQATIIAP*TYVYAIELLFDLLHEGAKALDV<KIG |
Parental | SGILTACFARMVGCSGKV--IGIDHIKELVDDSINNVRKDDPTL-LSSGRVQLVVGDGRMGYAEEAPYDA |
SG.LT.CFAR.VGCSGKV..IGIDHIKEL.DDSIN.VRKDD.T..LSSGRVQLVVGDG.MG.AEEA...A | |
Retrocopy | SGTLTTCFARIVGCSGKVIGIGIDHIKELTDDSINSVRKDDATI<LSSGRVQLVVGDGQMGHAEEAWDNA |
Parental | IHVGAAA |
.HVGAAA | |
Retrocopy | FHVGAAA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .11 RPM | 174 .17 RPM |
SRP017611_kidney | 0 .10 RPM | 39 .22 RPM |
SRP017611_liver | 0 .00 RPM | 19 .58 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000009230 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000029462 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000000499 | 2 retrocopies |
retro_ocun_871, retro_ocun_955 ,
|
Ochotona princeps | ENSOPRG00000002833 | 2 retrocopies | |
Tupaia belangeri | ENSTBEG00000000451 | 1 retrocopy |