>retro_ocun_957
GTTGTTGCCTAAGAAATGGCCTTGGCGCACAGAATCATGCTGGCCAATGTCCACTTGGCCTATGCCCCCATGCACTGCCC
ACCAGCCCAGAAGTCCAGTGCTTTTGTCAGCTTCCATATCCCCCTCACCCAGTGTGACACCACAGTTCAAGTGCTTGTGA
GCTGGCTCATCTACGAGAACCAGCTTGTGTCTGACATTGACATCCAGGAGGGGCCACAGGGTTCCATCACATGGGACAGC
TCCTCCTGGCTTCACGTCCACTGTGTCTTCAGTGCCAGCAACTTCCTTCCCATCCAGGTGTCCATCTTTTCACCTCTATT
GCCTGCCCCTGTAACTCAGGCTGGCCTCCTGTGGCTGGAGCTAGGGATTGCCAGGGATGAGACTTTTAGCTCCTTATGTG
AAGAGGAGACTATCCCCTTGCGAGGCTGCTCTGAGAACTGGTCCATGTGGCAGTCCAGCTGGTGCAGAGGACAGACCCCA
GTCTGGTGCTGGTGCTACACCAGTGTTGGGCCACTCCCAGTGCCAACACCTTCCAGCAGCCCCAGTGGCCCCTCCTGTCA
GACGGGTGTCCTTTCAAGGATGACAGCTACAGAACCCGAATGGTAGCCTTGGAACAGGTAGTGCTGCCCTTCCAGTCTCA
CTACCAGCATTTCACAGTTACTACCTTCACTTTCCTGGACTCTGGGGCTCAGTGAGCCCTCAGGGGACTGGTTTACTTCT
TCTGCAGCACCTCAGCCTGCCACCCCTCAGGGCCAGAGGCTTGCTCATCTACATGTAGCTCTGGCACTGCCAAGCGCAGA
TGATGCTCAGGTTACCATGACAGCATCCCCGTGCCCCTGGACATCGTGAGTTCTCCAGGGCCAGTGGGATTCCAGGATTC
TCACAGGCAGGAGCCCACGCTGGAGTCCACAGGCTCCAGCAGGAACTCCAACCCAAAGCCTCTGCTCTGGGTGGTGCTTC
TGTTGCTGGCTATTGCCCTTGTCCTGGGGATCGGTGTCTTTGTGGGCCTGAGCCAGGCCTGGGCCCACAAGCTCCAGGAA
GGCAACAGGCTC
ORF - retro_ocun_957 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
82.39 % |
Parental protein coverage: |
55.89 % |
Number of stop codons detected: |
4 |
Number of frameshifts detected |
1 |
Retrocopy - Parental Gene Alignment:
Parental | VVAQEMALAHRITLANVHLAYAPTRCPPAQKTSAFVIFHVPLTHCGTTVQVLGSQLFYENQLVSDIDVRE |
| VVA.EMALAHRI.LANVHLAYAP..CPPAQK.SAFV.FH.PLT.C.TTVQVL.S.L.YENQLVSDID..E |
Retrocopy | VVA*EMALAHRIMLANVHLAYAPMHCPPAQKSSAFVSFHIPLTQCDTTVQVLVSWLIYENQLVSDIDIQE |
|
Parental | GPQGSITRDSSFRLLVRCIFNASDFLPIQASIFSPPLPAPVTQAGPLRLELRIARDETFSSFYEEE-DYP |
| GPQGSIT.DSS..L.V.C.F.AS.FLPIQ.SIFSP.LPAPVTQAG.L.LEL.IARDETFSS..EEE.DYP |
Retrocopy | GPQGSITWDSSSWLHVHCVFSASNFLPIQVSIFSPLLPAPVTQAGLLWLELGIARDETFSSLCEEE<DYP |
|
Parental | LVRLLREPVHVEVRLLQRTDPSLVLELHQCWATPSANPVQQPQWPLLSDGCPFKGDSYRTRVLALDRAEL |
| L.RLL.E.VHV.V.L.QRTDPSLVL.LHQCWATPSAN..QQPQWPLLSDGCPFK.DSYRTR..AL....L |
Retrocopy | LARLL*ELVHVAVQLVQRTDPSLVLVLHQCWATPSANTFQQPQWPLLSDGCPFKDDSYRTRMVALEQVVL |
|
Parental | PFRSHYQRFTVATFTFLDSGAQRALRGLVYFFCSASACHPSGPETCSSTCSSRTAKRRRSSGYHDGTPRA |
| PF.SHYQ.FTV.TFTFLDSGAQ.ALRGLVYFFCS.SACHPSGPE.CSSTCSS.TAKRR..SGYHD..P.. |
Retrocopy | PFQSHYQHFTVTTFTFLDSGAQ*ALRGLVYFFCSTSACHPSGPEACSSTCSSGTAKRR*CSGYHDSIPVP |
|
Parental | LDIVSSPGPVGFQDSHRQEPTLESTGSGRNSNPKPLLWVVLLLLAIALVLGIGVFVGLSQAWAHKLREGH |
| LDIVSSPGPVGFQDSHRQEPTLESTGS.RNSNPKPLLWVVLLLLAIALVLGIGVFVGLSQAWAHKL.EG. |
Retrocopy | LDIVSSPGPVGFQDSHRQEPTLESTGSSRNSNPKPLLWVVLLLLAIALVLGIGVFVGLSQAWAHKLQEGN |
|
Parental | RL |
| RL |
Retrocopy | RL |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
Library |
Retrocopy expression |
Parental gene expression |
SRP017611_brain |
0 .00 RPM |
0 .00 RPM |
SRP017611_kidney |
0 .00 RPM |
0 .10 RPM |
SRP017611_liver |
0 .00 RPM |
0 .39 RPM |
Oryctolagus cuniculus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_ocun_957 retrocopy.
Oryctolagus cuniculus was not studied using FANTOM5 data.
retro_ocun_957 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_ocun_957 has 0 orthologous retrocopies within eutheria group .
Parental genes homology:
Parental genes homology involve
1 parental gene, and
1 retrocopy.