>retro_ocun_963
CCAAGTAGAAAGTTTGCAGATGGTGAAGTGGTAAGAGGTCGGTGGCCCAGAGTTCACTTTATTATGAAGTGGAGATTTTG
AGCCACGATGACAAATCTCAACTATACACTGTAAAATACGAGCATGGAACTGAGCTGGAATTGGAGGAAAGTGACATCAA
ACCTTTAACTACTTTTAAGCAAAATAAAAGTGGCTCAACCTCCAGTTCTCCCTCCAGATGGTGGGGGAGCAAAGGGAGTC
GAGGGAGTCAGTCAAGATCACACTCCCAGGCCCCTGGTTGACCACCTAGAAGTTCCCAAAGATCTGCCTCCACTTCCCAC
CAGCCTGCCATTCAGGAAACAAAGAGGGAAATATTGGAAGTCAAATTGACTCCTCTGGTGTTGAGGCCATTTGGAAATAG
CATCAGCAGATACAATGGGGAAGCAGAGCATGTGGAGTGGAATGTGGAGAAGAATGAGCTGCCTGATAAGAACACACAGG
AAAATTCCATTTACCACAAGGAGCAGTTACGTATCTACACAGTATAGCCTTCATCCTAGAAGAGATCAAATTAAAAAAAC
AGATTTTAATGAAGAAAAACTTGTTACCAAAAGACCTGCATTGTTCAGGACCTATGAAGTGAGCACCACCCAGACAGAGG
ACCTGGAGTTCAGAGGAGTCCCTGGTGTGTTCCTCATCATGATTGGCCTGCCTGTCTTCCTCTTCCTGTTGCTGTTGATG
TGTAAACAGGATGAGTTCAGTCTTCTCAACTTCCCTCCTCCTCTGCCAGCTTGGGATGATTTCTGGGAAATGAGAGTGTT
TGGGGTCTACCTCCTCTGGTTTTTCATTCAAGCTCTGTTCTACCTACTGCCAATTGGGCAGGTTGTAGAAGGAATGCCTC
TTATTAATGGGAGAAGACTCAAGAACAGATTAAATGGTTTCTACGCATTCCTCCTGACATCAGCTGTTGGAGCC
ORF - retro_ocun_963 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
86.15 % |
Parental protein coverage: |
51.36 % |
Number of stop codons detected: |
1 |
Number of frameshifts detected |
3 |
Retrocopy - Parental Gene Alignment:
Parental | PSRKFADGEVVRGRWPG-SSLYYEVEILSHDSKSQLYTVKYKDGTELELKESDIKPLTSFKQRKSGSTSS |
| PSRKFADGEVVRGRWP..SSLYYEVEILSHD.KSQLYTVKY..GTELEL.ESDIKPLT.FKQ.KSGSTSS |
Retrocopy | PSRKFADGEVVRGRWPR<SSLYYEVEILSHDDKSQLYTVKYEHGTELELEESDIKPLTTFKQNKSGSTSS |
|
Parental | SPSRRRGSKGSRGSRSRSRSRSPGRPPRSSRRSASASHQPDIQETRREILEVKLTPLVLKPFGNSISRYN |
| SPSR..GSKGSRGS.SRS.S..PG.PPRSS.RSAS.SHQP.IQET.REILEVKLTPLVL.PFGNSISRYN |
Retrocopy | SPSRWWGSKGSRGSQSRSHSQAPG*PPRSSQRSASTSHQPAIQETKREILEVKLTPLVLRPFGNSISRYN |
|
Parental | GEAEHVERNTERNELPQKNTQE-KFHLPQ-ESSYVSTQYSLRPRREEIKLKETDFNEEKLVTKRPALLRT |
| GEAEHVE.N.E.NELP.KNTQE.KFHLPQ..SSYVSTQYSL.PRR..IK...TDFNEEKLVTKRPAL.RT |
Retrocopy | GEAEHVEWNVEKNELPDKNTQE<KFHLPQ<RSSYVSTQYSLHPRRDQIK--KTDFNEEKLVTKRPALFRT |
|
Parental | YEVSTTQTEDLEFGGVPGVLLLMIGLPVFLFLLLLMCKQDEPSLLNFPPPLPAWGDLWETRVFGVYLLWF |
| YEVSTTQTEDLEF.GVPGV.L.MIGLPVFLFLLLLMCKQDE.SLLNFPPPLPAW.D.WE.RVFGVYLLWF |
Retrocopy | YEVSTTQTEDLEFRGVPGVFLIMIGLPVFLFLLLLMCKQDEFSLLNFPPPLPAWDDFWEMRVFGVYLLWF |
|
Parental | FVQALFYLLPIGKVVEGMPLINGRRLKYRLNGFYAFLLTSAAVGA |
| F.QALFYLLPIG.VVEGMPLINGRRLK.RLNGFYAFLLTS.AVGA |
Retrocopy | FIQALFYLLPIGQVVEGMPLINGRRLKNRLNGFYAFLLTS-AVGA |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
Library |
Retrocopy expression |
Parental gene expression |
SRP017611_brain |
0 .00 RPM |
16 .61 RPM |
SRP017611_kidney |
0 .00 RPM |
14 .90 RPM |
SRP017611_liver |
0 .00 RPM |
24 .51 RPM |
Oryctolagus cuniculus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_ocun_963 retrocopy.
Oryctolagus cuniculus was not studied using FANTOM5 data.
retro_ocun_963 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_ocun_963 has 0 orthologous retrocopies within eutheria group .
Parental genes homology:
Parental genes homology involve
2 parental genes, and
2 retrocopies.